BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0127.0019.p         (75 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll9610 [U] COG3838 Type IV secretory pathway, VirB2 components ...   104   4e-23
mlr6398 [U] COG3838 Type IV secretory pathway, VirB2 components ...    81   5e-16
RSc2583 [U] COG3838 Type IV secretory pathway, VirB2 components ...    72   2e-13

>mll9610 [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
          Mlo Mesorhizobium loti
          Length = 110

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 54/55 (98%)

Query: 1  MPWEQPLNQILQSVEGPVAKIVAVIIIVVTGLTLAFGDSSGGFRRLIQIVFGLSI 55
          MPWEQPL +ILQSVEGPV+KI+AVIII+VTGLTLAFGDSSGGFRRLIQIVFGLSI
Sbjct: 36 MPWEQPLEKILQSVEGPVSKIMAVIIIIVTGLTLAFGDSSGGFRRLIQIVFGLSI 90


>mlr6398 [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
          Mlo Mesorhizobium loti
          Length = 102

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/55 (87%), Positives = 53/55 (96%)

Query: 1  MPWEQPLNQILQSVEGPVAKIVAVIIIVVTGLTLAFGDSSGGFRRLIQIVFGLSI 55
          MPWEQPL QIL+SV+GPVAKIVAVIII+ TGLTLAFGD++GGFRRLIQIVFGLSI
Sbjct: 28 MPWEQPLQQILESVQGPVAKIVAVIIIITTGLTLAFGDTAGGFRRLIQIVFGLSI 82


>RSc2583 [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
           Rso Ralstonia solanacearum
          Length = 130

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 68/75 (90%)

Query: 1   MPWEQPLNQILQSVEGPVAKIVAVIIIVVTGLTLAFGDSSGGFRRLIQIVFGLSIAFAAS 60
           MPWE PL  IL+S++GPVA+IVAVIII+ TGL LAFGD+SGGFR+LIQIVFGLSIAFAAS
Sbjct: 56  MPWEGPLQSILESIQGPVARIVAVIIIIATGLALAFGDTSGGFRKLIQIVFGLSIAFAAS 115

Query: 61  SFFLSFFSFGGGVVI 75
           SFFLSFFSF GG V+
Sbjct: 116 SFFLSFFSFSGGAVV 130