BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0127.0004.p         (170 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr9742 Non COG                                                       153   2e-37
mlr6188 Non COG                                                       114   8e-26
RSc2602 [OU] COG4959 Type IV secretory pathway, protease TraF Rs...    85   9e-17

>mlr9742 Non COG
          Length = 181

 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 97/142 (68%)

Query: 28  PIYIWNASASVPIGLYGLRPAKRFLVTELVAVQPPEPLATFLDFNGYLPLGVPMLKRVLA 87
           P+ +WNASAS P+GLY +R         LV V+PP+ +A F    GYLPLGVPMLK +  
Sbjct: 27  PLLLWNASASAPLGLYAIRKMAVPTAGALVVVEPPDKVARFAAERGYLPLGVPMLKHIEG 86

Query: 88  LPGQTVCRSGPAISVDDIAVGEARDRDGRGRPLPKWQGCRVVRDGELFVMNWQSVDSLDG 147
           LPGQ VCR    I+V  +AVG A +RD +GR LP WQGCRV+   E+FV+N +  DSLDG
Sbjct: 87  LPGQPVCRLSRLITVTGLAVGVALERDRKGRALPDWQGCRVIAATEIFVLNRKVEDSLDG 146

Query: 148 RYFGLLPASAVIGRAIPVWTWE 169
           RYFG  PAS+++G A P+WT E
Sbjct: 147 RYFGPFPASSIVGAARPLWTDE 168


>mlr6188 Non COG
          Length = 182

 Score =  114 bits (286), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 86/146 (58%), Gaps = 7/146 (4%)

Query: 25  EPLPIYIWNASASVPIGLYGL---RPAKRFLVTELVAVQPPEPLATFLDFNGYLPLGVPM 81
           +P P+ +WNASAS P+GLY +    PA+     +LV  +PP  +A   D  GYLP  +P+
Sbjct: 40  KPSPLLVWNASASAPVGLYRVGSGTPAR----GDLVLARPPGFVAYLADQRGYLPRNIPL 95

Query: 82  LKRVLALPGQTVCRSGPAISVDDIAVGEARDRDGRGRPLPKWQGCRVVRDGELFVMNWQS 141
           +KR+ ALP + VC    AI +    V      D +GRPLP W GCR +   E+F++  + 
Sbjct: 96  VKRLAALPDEHVCAFSNAIIIGGEIVARRLKIDTQGRPLPWWNGCRALAHDEVFLLGNEK 155

Query: 142 VDSLDGRYFGLLPASAVIGRAIPVWT 167
             S D RYFG +PA  +IGR +P+WT
Sbjct: 156 NHSFDSRYFGPVPAENIIGRLVPLWT 181


>RSc2602 [OU] COG4959 Type IV secretory pathway, protease TraF Rso Ralstonia
           solanacearum
          Length = 199

 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 24  LEPLPIYIWNASASVPIGLYGLRP--------AKRFLVTELVAVQPPEPLATFLDFNGYL 75
           + PLP   +N S SV +G Y + P         +   V  +V V  P   AT     GYL
Sbjct: 44  VSPLPRLTYNPSDSVAVGWYRIDPFDSRTASLPRPLSVDSIVLVPLPATAATLAAQRGYL 103

Query: 76  PLGVPMLKRVLALPGQTVCRSGPAISVDDIAVGEARDRDGRGRPLPKWQGCRVVRDGELF 135
           P  +P+LKRV A+  Q VC     + +D +        D  GRPLP  Q CR +  GEL+
Sbjct: 104 PTHIPLLKRVGAVAPQHVCIVAGQVRIDGVPSAAVLPADRLGRPLPSLQLCRRLEPGELY 163

Query: 136 VMNWQSVDSLDGRYFGLLPASAVIGRAIPVW 166
           +++  +  S D RYFG + ASAVIG A P+W
Sbjct: 164 LLSVTNPASFDSRYFGPVSASAVIGIARPIW 194