BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0128.p (244 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc04134 [K] COG1309 Transcriptional regulator Sme Sinorhizobium... 191 1e-48 SMa1428 [K] COG1309 Transcriptional regulator Sme Sinorhizobium ... 191 1e-48 CC2608 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib... 189 6e-48 RSp1395 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 176 5e-44 AGl1690GM [K] COG1309 Transcriptional regulator Atu Agrobacteriu... 166 4e-41 >SMc04134 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti Length = 225 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 96/197 (48%), Positives = 132/197 (67%) Query: 21 RDSALTKEAILHAATFEFCRNGIGGARVEAIAKRAKANMRLLYAYFGDKNGLYLAVLEHV 80 RD T+ +IL AAT EF NGIGGARV+AIA+RA N R+LY YFGDK LYLAVLE Sbjct: 24 RDPERTRASILAAATREFAENGIGGARVDAIAERAGINKRMLYHYFGDKEQLYLAVLEEA 83 Query: 81 YTEIRAAEQQLKLDDLDPVAAMRELINFTFTFFGAHQNYIALINNENLQRGRNLRKSRKI 140 Y IR AE+ L L DL+P + EL FT+ +F H +++L+ ENL R R LR+S ++ Sbjct: 84 YVGIRTAEKSLNLSDLEPEQGIAELAMFTWGYFLEHPEFLSLLGTENLHRARWLRQSTRL 143 Query: 141 ADLTLPLVASIENILRRGLAVGLFRSDVDPVQLYVTITAMSYFHVSNRYTLSAMFDKDLG 200 +L + + ++L+RG A GLFR DVDP+ LY+TI A+ YF++SN+YTLS +F +DL Sbjct: 144 KELHSSFIDKLSDLLQRGKAGGLFRPDVDPLNLYLTIAALGYFYLSNQYTLSTIFGRDLM 203 Query: 201 EPDWLEKRRHHALDVIM 217 + L+ + H + V + Sbjct: 204 DKSNLDVWQRHIVHVTL 220 >SMa1428 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti Length = 219 Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 145/218 (66%), Gaps = 1/218 (0%) Query: 5 TASTNPARSATRGRRARDSALTKEAILHAATFEFCRNGIGGARVEAIAKRAKANMRLLYA 64 T S A+SA + R RD+ TK IL AA EF +NG+GGARV+ IA++A AN R++Y Sbjct: 3 TTSAQKAKSAGKPR-LRDAEATKARILEAAKKEFAKNGLGGARVDVIAEKANANKRMIYH 61 Query: 65 YFGDKNGLYLAVLEHVYTEIRAAEQQLKLDDLDPVAAMRELINFTFTFFGAHQNYIALIN 124 YF K+ L+ VLE Y IR AEQ+L L+DL+P AA+ +L+ FT+ ++ H +I L+N Sbjct: 62 YFDGKDHLFQTVLEDAYNGIRTAEQKLNLNDLEPKAALEKLVRFTWEYYLKHPEFITLVN 121 Query: 125 NENLQRGRNLRKSRKIADLTLPLVASIENILRRGLAVGLFRSDVDPVQLYVTITAMSYFH 184 +ENL R ++L+KS+ + + V ++ +L RG++ G+FR +DPVQL +TI A+ Y++ Sbjct: 122 SENLHRAKHLKKSQVVRATSRKFVGMVKELLERGVSEGVFRPGIDPVQLNLTIAAIGYYY 181 Query: 185 VSNRYTLSAMFDKDLGEPDWLEKRRHHALDVIMTWLTA 222 ++NR+T S +F++DL D LE+R ++ IM + A Sbjct: 182 ITNRFTGSIVFERDLMAKDALEERVQFNIETIMRMVCA 219 >CC2608 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides Length = 230 Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 95/209 (45%), Positives = 132/209 (63%) Query: 13 SATRGRRARDSALTKEAILHAATFEFCRNGIGGARVEAIAKRAKANMRLLYAYFGDKNGL 72 SA R R++ T++AIL AA EF + G GAR+E I K AK N+R+LY YFGDK GL Sbjct: 16 SADGAPRKRNAERTRKAILAAALKEFAQAGFAGARIEKIVKAAKCNIRMLYHYFGDKKGL 75 Query: 73 YLAVLEHVYTEIRAAEQQLKLDDLDPVAAMRELINFTFTFFGAHQNYIALINNENLQRGR 132 Y+AVLE Y ++RA E +LK+D P+ EL FTF +F + + L+ NENLQ G+ Sbjct: 76 YMAVLESAYMDLRAREAELKIDFEKPLDGFLELQRFTFDYFEKNPRFEGLLRNENLQHGK 135 Query: 133 NLRKSRKIADLTLPLVASIENILRRGLAVGLFRSDVDPVQLYVTITAMSYFHVSNRYTLS 192 +SR + + PL +IE ++ G G+F D+DPVQ+YVTI AMS FH++N Y+LS Sbjct: 136 FAAQSRVVTETAFPLRRTIERLIESGQRQGIFGPDLDPVQIYVTIAAMSRFHLANGYSLS 195 Query: 193 AMFDKDLGEPDWLEKRRHHALDVIMTWLT 221 A + D+ P+W R HAL ++ +LT Sbjct: 196 ATLNTDMSAPEWRRARLDHALALLEGYLT 224 >RSp1395 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 224 Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 131/221 (59%), Gaps = 2/221 (0%) Query: 9 NPARSA--TRGRRARDSALTKEAILHAATFEFCRNGIGGARVEAIAKRAKANMRLLYAYF 66 PA +A R +R D T+ IL AT EF G GARV+ IA+R + R++Y YF Sbjct: 3 QPADTAAPVRPKRKNDPERTRADILAVATEEFAEQGFSGARVDMIAERTRTTKRMIYYYF 62 Query: 67 GDKNGLYLAVLEHVYTEIRAAEQQLKLDDLDPVAAMRELINFTFTFFGAHQNYIALINNE 126 G K GLYLAVLE Y EIRA E L+L D+DP AAMR LI TF + +H ++ L+ E Sbjct: 63 GSKEGLYLAVLEKKYEEIRAFESSLQLSDMDPEAAMRALIGATFDYEESHPEFVRLVAVE 122 Query: 127 NLQRGRNLRKSRKIADLTLPLVASIENILRRGLAVGLFRSDVDPVQLYVTITAMSYFHVS 186 N+ R+L +S+ IA+L + +V +I+++L RG A G FR+DV + L++ IT+ +F VS Sbjct: 123 NIHNARHLAQSKTIANLNVTIVETIQSLLERGRAAGRFRADVQALDLHLLITSFCFFRVS 182 Query: 187 NRYTLSAMFDKDLGEPDWLEKRRHHALDVIMTWLTAMAAAS 227 NR TL F + LG P + + D ++ +L A+ Sbjct: 183 NRATLETAFGQKLGTPKTRARHKQMLCDAVIRYLEGGGPAT 223 >AGl1690GM [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 232 Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 128/211 (60%) Query: 7 STNPARSATRGRRARDSALTKEAILHAATFEFCRNGIGGARVEAIAKRAKANMRLLYAYF 66 T P + + R+ T+ AIL AA E G+ GAR++ +A+RA N R++Y YF Sbjct: 16 ETLPPKRKRATTQVRNPERTRAAILEAARREVAAKGLAGARIDVVARRAGTNKRMIYHYF 75 Query: 67 GDKNGLYLAVLEHVYTEIRAAEQQLKLDDLDPVAAMRELINFTFTFFGAHQNYIALINNE 126 GDK+ LYLAVLE Y IR E++L L P +REL FT+ +F H +++++ E Sbjct: 76 GDKDALYLAVLEDAYRHIRHTERRLDLTRKPPAEGLRELALFTWHYFLDHPEFLSILATE 135 Query: 127 NLQRGRNLRKSRKIADLTLPLVASIENILRRGLAVGLFRSDVDPVQLYVTITAMSYFHVS 186 NL + R LR+S IA + ++ +E++LRRG G FR +DP+ +Y+TI ++ F++S Sbjct: 136 NLNKARYLRQSPTIAAMHSNFISELEDVLRRGSDAGEFRDGLDPIDVYLTIASLGAFYLS 195 Query: 187 NRYTLSAMFDKDLGEPDWLEKRRHHALDVIM 217 NR+TLS +F +DL +P LE+ H + ++ Sbjct: 196 NRFTLSTIFQRDLTDPAELERWGQHIVSTLL 226