BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0120.0111.p         (103 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0830 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and r...   139   2e-33
AGl166 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and rela...   134   7e-32
alr2830 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and rel...   126   1e-29
CC3633 Non COG                                                        114   4e-26
slr0985 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and rel...   110   6e-25

>BMEII0830 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related
           enzymes Bme Brucella melitensis
          Length = 184

 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 62/100 (62%), Positives = 74/100 (74%)

Query: 1   VRCLNGSIWDVIVDLRANSPTFRQWRGFELSAENGSQLYIPKGFAHGFQTLSDNVQVNYL 60
           V CL G +WDV+VDLR +SPT+R+W G ELSAENG QLYIP+G AHGFQTL+D+V + Y+
Sbjct: 84  VTCLQGIVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLTDDVLIRYM 143

Query: 61  ISEFYEPSAANGVRYDDPMFGISWPLAVSTISDKDLNWPL 100
           IS+ Y P  A G+RYDDP   I WP   S IS KDL WP 
Sbjct: 144 ISKPYAPDHAAGIRYDDPALDIPWPEKPSVISQKDLGWPF 183


>AGl166 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related
           enzymes Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 181

 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 75/99 (75%)

Query: 1   VRCLNGSIWDVIVDLRANSPTFRQWRGFELSAENGSQLYIPKGFAHGFQTLSDNVQVNYL 60
           V C+ GSIWDV VDLR  SPT+ QW G  LSA+NG+Q YIP+GFAHGFQ+LSD+V V+YL
Sbjct: 80  VSCVKGSIWDVAVDLRRGSPTYLQWVGTVLSADNGAQFYIPEGFAHGFQSLSDDVAVSYL 139

Query: 61  ISEFYEPSAANGVRYDDPMFGISWPLAVSTISDKDLNWP 99
           IS  Y  ++A G+R+D+P  G+ WP   S IS+KDL WP
Sbjct: 140 ISVPYAEASAAGIRHDEPAIGVEWPAPASVISEKDLGWP 178


>alr2830 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related
           enzymes Nos Nostoc sp. PCC 7120
          Length = 189

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 72/100 (72%)

Query: 1   VRCLNGSIWDVIVDLRANSPTFRQWRGFELSAENGSQLYIPKGFAHGFQTLSDNVQVNYL 60
           +RC+ G+I+DVI+D+R  SPTF    G EL+A+N   LY+P+ FAHG+Q L+D+ +V Y 
Sbjct: 74  IRCIKGAIYDVIIDMRPESPTFLSHIGVELTADNRRALYVPEMFAHGYQALTDDAEVVYQ 133

Query: 61  ISEFYEPSAANGVRYDDPMFGISWPLAVSTISDKDLNWPL 100
           + EFY P    G+RY+DP F I WPL V+ ISDKD +WPL
Sbjct: 134 VGEFYTPGYEKGLRYNDPFFNIEWPLDVTVISDKDASWPL 173


>CC3633 Non COG
          Length = 185

 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 71/102 (69%), Gaps = 2/102 (1%)

Query: 1   VRCLNGSIWDVIVDLRANSPTFRQWRGFELSAENGSQLYIPKGFAHGFQTLSDNVQVNYL 60
           +RC+ GSI+DV VD+R  SPTF  W G ELSAEN  QL +PKGFAHG+ TLSD  +V Y 
Sbjct: 74  LRCVVGSIFDVAVDIRKGSPTFGHWVGAELSAENRQQLLVPKGFAHGYVTLSDACEVLYK 133

Query: 61  ISEFYEPSAANGVRYDDPMFGISWPLAVSTIS--DKDLNWPL 100
           ++++Y P A  GVR+ DP  GI WP+ ++ I+  D+D   PL
Sbjct: 134 VTDYYAPQAEGGVRWSDPAIGIEWPIPLNEITANDRDNAAPL 175


>slr0985 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related
           enzymes Syn Synechocystis
          Length = 189

 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 65/100 (65%)

Query: 1   VRCLNGSIWDVIVDLRANSPTFRQWRGFELSAENGSQLYIPKGFAHGFQTLSDNVQVNYL 60
           V C+ G +WDV VDLR +SPTF  W+G  LSA+N   L IP+G AHGFQ LSD+V++ Y 
Sbjct: 80  VTCIRGQVWDVAVDLRVDSPTFLTWQGVVLSADNNRALLIPEGCAHGFQALSDDVELIYC 139

Query: 61  ISEFYEPSAANGVRYDDPMFGISWPLAVSTISDKDLNWPL 100
            S  Y P A  G+   DP  GI WP A++ +S +D N PL
Sbjct: 140 HSVAYNPMAEGGLNPQDPRLGIEWPQAITELSQRDQNHPL 179