BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0086.p (380 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2552 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 264 2e-70 FN1424_1 [I] COG1960 Acyl-CoA dehydrogenases Fnu Fusobacterium n... 249 8e-66 CC1350 Non COG 249 9e-66 BS_yngJ [I] COG1960 Acyl-CoA dehydrogenases Bsu Bacillus subtilis 243 4e-64 BH3799 [I] COG1960 Acyl-CoA dehydrogenases Bha Bacillus halodurans 241 2e-63 >PA2552 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 375 Score = 264 bits (675), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 150/375 (40%), Positives = 214/375 (57%), Gaps = 11/375 (2%) Query: 7 EDEALVKGSLEQFTAGALRPRIKPFA---DR-HEFPIELVKEFLALGFMGTAYDPAFGGG 62 E+E ++ QF + R+KPFA DR H FP E ++E LGF+G +GG Sbjct: 5 EEEIQIRDMARQFA----QERLKPFAADWDREHRFPAEAIREMADLGFLGMLVPEEWGGA 60 Query: 63 GLGTRGAAIVAETLARAEPGFAAIF-LCNSAPMTVIARYGSDDLKRKWLEPLCRGDFIAS 121 G A+ E +A + + I + NS I ++GS + K ++L PL +G + + Sbjct: 61 QTGHLAYAMALEEIAAGDGACSTIMSVHNSVGCMPIHKFGSAEQKERFLRPLAQGSMLGA 120 Query: 122 FGVTEPSGGSDVASVKMRAVEDGDSFVLSGSKVFSTNAGTPLHGITTFVAVTDPDLGAKG 181 F +TEP GSD + +K RA DGD +VL+G+K F T+ G+ AVTDPD G +G Sbjct: 121 FALTEPQAGSDASFLKTRARRDGDHYVLNGAKQFITSGSHA--GMVIVFAVTDPDAGKRG 178 Query: 182 LSTFVVPVGTPGFRVGKASRKIGWRVADSVELFLDDCRVPKANMVGNRGDGLRQILTTLS 241 +S F+VP TPG+ V + K+G +D+ +L +D R+P +G G+G R L L Sbjct: 179 ISAFIVPTDTPGYEVVRIEDKLGQHASDTCQLAFNDLRIPATLRLGEEGEGYRIALANLE 238 Query: 242 IGRILVAATGLGLARKAIDLAKVYGSGRQVGGTPIFQHQGLTFPLADALTKIHAAELMIR 301 GRI +AA +G+AR A + A+ Y R+ G PI +HQ + F LAD T+I A M+ Sbjct: 239 GGRIGIAAQAVGMARAAFEAARDYAHERETFGKPIIEHQAVAFRLADMATRIAVARQMVH 298 Query: 302 NAACLADADRPFRLETSMAKLFATEMAGEAADIALQVHGGYGAFEEFDVSSLPGEARVLR 361 +AA L +A P E SMAKLFA+EMA E A+Q GGYG ++F V + + RV + Sbjct: 299 HAASLREAGLPCLTEASMAKLFASEMAEEVCSAAIQTLGGYGYLKDFPVERIYRDVRVCQ 358 Query: 362 ILEGTSEIQRLVIAR 376 I EGTS++QRLVIAR Sbjct: 359 IYEGTSDVQRLVIAR 373 >FN1424_1 [I] COG1960 Acyl-CoA dehydrogenases Fnu Fusobacterium nucleatum Length = 377 Score = 249 bits (636), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 137/378 (36%), Positives = 217/378 (57%), Gaps = 7/378 (1%) Query: 1 MLLDLNEDEALVKGSLEQFTAGALRPRIKPFADRHEFPIELVKEFLALGFMGTAYDPAFG 60 ML E+ ++ + +F ++P ++FP E +K+F +GFMG Y +G Sbjct: 1 MLFKTTEEHEALRMQVREFVETEVKPIAAILDKENKFPHEAIKKFGQMGFMGLPYPKEYG 60 Query: 61 GGGLGTRGAAIVAETLARAEPGFAAIFLCN-SAPMTVIARYGSDDLKRKWLEPLCRGDFI 119 G G AI E L+R + G I + S I +G+++ K+K+L PL +G+ + Sbjct: 61 GAGKDILSYAIAVEELSRVDGGTGVILSAHVSLGSYPIFAFGTEEQKKKYLTPLAKGEKL 120 Query: 120 ASFGVTEPSGGSDVASVKMRAVEDGDSFVLSGSKVFSTNAGTPLHGITTFV--AVTDPDL 177 +FG+TEP+ GSD + AV++GD ++L+G K+F TNA T+V AVT PD+ Sbjct: 121 GAFGLTEPNAGSDAGGTETTAVKEGDYYILNGEKIFITNADVA----ETYVVFAVTTPDI 176 Query: 178 GAKGLSTFVVPVGTPGFRVGKASRKIGWRVADSVELFLDDCRVPKANMVGNRGDGLRQIL 237 G KG+S F+V G GF G K+G R + + +L ++ +VPK N++G GDG + + Sbjct: 177 GTKGISAFIVEKGWEGFTFGDHYDKLGIRSSSTCQLLFNNVKVPKENLLGKEGDGFKIAM 236 Query: 238 TTLSIGRILVAATGLGLARKAIDLAKVYGSGRQVGGTPIFQHQGLTFPLADALTKIHAAE 297 +TL GRI +AA LG+A+ A + A Y R+ G PI Q ++F LAD TK+ A Sbjct: 237 STLDGGRIGIAAQALGIAQGAFEHALEYAKEREQFGKPIAFQQAISFKLADMATKLRTAR 296 Query: 298 LMIRNAACLADADRPFRLETSMAKLFATEMAGEAADIALQVHGGYGAFEEFDVSSLPGEA 357 +I +AA L + P+ +E++MAK +A+++A E + A+Q+ GG G + +V +A Sbjct: 297 FLIYSAAELKEHHEPYGMESAMAKQYASDIALEVVNDAVQIFGGSGYLKGMEVERAYRDA 356 Query: 358 RVLRILEGTSEIQRLVIA 375 ++ I EGT+EIQR+VIA Sbjct: 357 KITTIYEGTNEIQRVVIA 374 >CC1350 Non COG Length = 379 Score = 249 bits (635), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 214/379 (56%), Gaps = 4/379 (1%) Query: 1 MLLDLNEDEALVKGSLEQFTAGALRPRIKPFADRHEFPIELVKEFLALGFMGTAYDPAFG 60 M LNED+ ++ + F G L P + + FP++++++ LGF G + G Sbjct: 1 MDFALNEDQVAIQDAARAFAEGQLAPHSADWDENKHFPVDVLRQAAELGFAGIYVNEDVG 60 Query: 61 GGGLGTRGAAIVAETLARAEPGFAAIFLCNSAPMTVIARYGSDDLKRKWLEPLCRGDFIA 120 G GL A+I+ E L+ + AA ++ +I R+GSDDL++++L L + IA Sbjct: 61 GSGLSRLDASIIFEALSYGDVPVAAYLTIHNMASWMIDRFGSDDLRQRYLPRLTTMELIA 120 Query: 121 SFGVTEPSGGSDVASVKMRAVEDGDSFVLSGSKVFSTNAGTPLHGITTFVAVTDPDLGAK 180 S+ +TEP GSD A+++ A DGD +VL+G K F + G I +A T + GAK Sbjct: 121 SYCLTEPGSGSDAAAMRTTAKLDGDHYVLNGGKAFISGGGVS--DIYVVMARTGGE-GAK 177 Query: 181 GLSTFVVPVGTPGFRVGKASRKIGWRVADSVELFLDDCRVPKANMVGNRGDGLRQILTTL 240 G+S FVV G G G RK+GW + ++ D+CRVP AN +G G+G R + L Sbjct: 178 GVSAFVVEKGMEGLSFGANERKMGWNAQPTAQVNFDNCRVPVANRIGQEGEGFRFAMMGL 237 Query: 241 SIGRILVAATGLGLARKAIDLAKVYGSGRQVGGTPIFQHQGLTFPLADALTKIHAAELMI 300 GR+ +A+ LG A+ A+D AK Y R G P+ Q L F LAD T++ AA LM+ Sbjct: 238 DGGRLNIASCSLGGAQFALDTAKAYLETRNQFGRPLKDFQALQFKLADMATELEAARLMV 297 Query: 301 RNAACLADADRPFRLE-TSMAKLFATEMAGEAADIALQVHGGYGAFEEFDVSSLPGEARV 359 R AA D+ P + +MAK FAT+ + A+ ALQ+HGGYG +++ + L + RV Sbjct: 298 RRAAHALDSKHPEATKLCAMAKRFATDAGFQVANDALQLHGGYGYLQDYPLERLVRDLRV 357 Query: 360 LRILEGTSEIQRLVIAREF 378 +ILEGT+EI R++IARE Sbjct: 358 HQILEGTNEIMRVIIAREM 376 >BS_yngJ [I] COG1960 Acyl-CoA dehydrogenases Bsu Bacillus subtilis Length = 380 Score = 243 bits (621), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 137/382 (35%), Positives = 213/382 (55%), Gaps = 8/382 (2%) Query: 1 MLLDLNEDEALVKGSLEQFTAGALRPRIKPFADRHEFPIELVKEFLALGFMGTAYDPAFG 60 M +L +++ +V+ ++ F + P + EFP++ K+ LG MG + +G Sbjct: 1 MNFELTKEQQMVREMVKDFAKKEIAPHAEHVDQTGEFPMQTFKKMGELGLMGIPFPEEYG 60 Query: 61 GGGLGTRGAAIVAETLARA----EPGFAAIFLCNSAPMTVIARYGSDDLKRKWLEPLCRG 116 G G T A+ E + +A +AA ++P+ +G+++ K+ L PL G Sbjct: 61 GSGGDTISYALAVEEVGKACGSTGLSYAAAVSLGASPLYY---FGTEEQKQTHLTPLASG 117 Query: 117 DFIASFGVTEPSGGSDVASVKMRAVEDGDSFVLSGSKVFSTNAGTPLHGITTFVAVTDPD 176 + SFG+TEP+ GSD + +A+ +GD +V++G K + TNA I T V + D Sbjct: 118 TALGSFGLTEPNAGSDAGGTQTKAISNGDEYVINGEKCWITNASYARTVIVTAVTGKNKD 177 Query: 177 LGAKGLSTFVVPVGTPGFRVGKASRKIGWRVADSVELFLDDCRVPKANMVGNRGDGLRQI 236 G +S +VP TPG + K+G R +++ E+ L+D RVP AN++G+ G +Q Sbjct: 178 -GKNIISALIVPTDTPGLTITSPYDKMGVRGSNTAEILLEDVRVPAANLLGDPTKGFKQF 236 Query: 237 LTTLSIGRILVAATGLGLARKAIDLAKVYGSGRQVGGTPIFQHQGLTFPLADALTKIHAA 296 L TL GRI +AA +G+A+ A+D + Y R+ G PI Q + F LAD +I A Sbjct: 237 LYTLDGGRISIAALAVGIAQAALDASLAYAKERKQFGQPISSFQAIQFKLADMAMEIDLA 296 Query: 297 ELMIRNAACLADADRPFRLETSMAKLFATEMAGEAADIALQVHGGYGAFEEFDVSSLPGE 356 M+ AA L D +RPF E + AKLFA+EMA A + A+Q+HGG G +E+ V + + Sbjct: 297 RQMVLKAAWLKDHNRPFTKEAAYAKLFASEMATRACNQAIQIHGGSGYMKEYGVERMLRD 356 Query: 357 ARVLRILEGTSEIQRLVIAREF 378 A+++ I EGTSEIQRLVIAR+ Sbjct: 357 AKLMEIGEGTSEIQRLVIARQL 378 >BH3799 [I] COG1960 Acyl-CoA dehydrogenases Bha Bacillus halodurans Length = 379 Score = 241 bits (615), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/386 (37%), Positives = 217/386 (56%), Gaps = 15/386 (3%) Query: 1 MLLDLNEDEALVKGSLEQFTAGALRPRIKPFADRHE----FPIELVKEFLALGFMGTAYD 56 M L +++ +++ + F + RI PF + E FP+ +VKE LG MG Sbjct: 1 MNLRWTDEQEMMRKMVRDFA----QERIAPFVEEMETNDTFPMHIVKEMGELGLMGIPIP 56 Query: 57 PAFGGGGLGTRGAAIVAETLARAEPGFAAIFLCNSAPMTV-IARYGSDDLKRKWLEPLCR 115 A+GG + I L++ I +++ T I +G+++ K +++ L + Sbjct: 57 EAYGGAEMDFTSYIIAIHELSKVSATVGVILSVHTSVGTNPILFFGTEEQKSRFIPKLAK 116 Query: 116 GDFIASFGVTEPSGGSDVASVKMRAVEDGDSFVLSGSKVFSTNAGTPLHGITTFV--AVT 173 G+++ +FG+TEPS GSD A++K A++ GD + L+GSKVF TN G T+V A T Sbjct: 117 GEYLGAFGLTEPSAGSDAANLKTTALKQGDHYRLNGSKVFITNGGAA----DTYVVFAST 172 Query: 174 DPDLGAKGLSTFVVPVGTPGFRVGKASRKIGWRVADSVELFLDDCRVPKANMVGNRGDGL 233 +P G KG+S F+V TPGF VGK +K+G +++ EL +D VPK N++G GDG Sbjct: 173 NPSAGRKGISAFIVEKETPGFTVGKKEKKMGLHGSNTTELIFEDALVPKENLLGVEGDGY 232 Query: 234 RQILTTLSIGRILVAATGLGLARKAIDLAKVYGSGRQVGGTPIFQHQGLTFPLADALTKI 293 + + L GRI +AA LG+A A++ A Y R+ G I Q Q + F LAD T++ Sbjct: 233 KIAMANLEAGRIGIAAQSLGIAEAALEAATSYAKERKQFGKSIGQQQAIAFKLADLATQV 292 Query: 294 HAAELMIRNAACLADADRPFRLETSMAKLFATEMAGEAADIALQVHGGYGAFEEFDVSSL 353 AA+L+ AA L E+SMAKLFA++ A +AA A+Q+ GGYG +E+ V Sbjct: 293 EAAKLLTYRAAQLKQQGISCAKESSMAKLFASKTAMKAAIEAVQIFGGYGYTKEYPVERY 352 Query: 354 PGEARVLRILEGTSEIQRLVIAREFT 379 +A+V I EGTSEIQR+VI + + Sbjct: 353 FRDAKVCEIYEGTSEIQRIVIHKHIS 378