BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0067.p (264 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yngF [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Bsu ... 205 7e-53 BH0207 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Bha B... 203 3e-52 CAC2712 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Cac ... 192 5e-49 AGc562 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Atu A... 192 6e-49 BH1135 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Bha B... 191 2e-48 >BS_yngF [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Bsu Bacillus subtilis Length = 260 Score = 205 bits (522), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 111/251 (44%), Positives = 159/251 (63%), Gaps = 1/251 (0%) Query: 13 RDGDILLVTLHRPEASNAMNTQMGLDLVELFEGFSTDIEGLRAVILTGHGDKAFCAGGDL 72 ++ + L+TL+RP+A+NA++ +M +L + + + +R VILTG G+KAFCAG DL Sbjct: 10 KNEHMALITLNRPQAANALSAEMLRNLQMIIQEIEFN-SNIRCVILTGTGEKAFCAGADL 68 Query: 73 KQRNGMTDEAWQAQHLVFERMLRALLGCPIPVIGAINGAAYGGGCEIAAALDFVYASTNA 132 K+R + ++ + +R L P PVI AING+A GGG E+A A D A+ A Sbjct: 69 KERIKLKEDQVLESVSLIQRTAALLDALPQPVIAAINGSALGGGLELALACDLRIATEAA 128 Query: 133 RFALTEVTLGIMPGGGGTQNLPRAVGERRAKELILSGQPFSAAEAERWGLVNRVLPPGEL 192 L E L I+PG GGTQ LPR +G +AKE I +G+ +A EA+ GLV V P +L Sbjct: 129 VLGLPETGLAIIPGAGGTQRLPRLIGRGKAKEFIYTGRRVTAHEAKEIGLVEHVTAPCDL 188 Query: 193 LEATFAIAHRIAANGPISVRQAKQAIHRGLQMSLADGLAFEIEAYNRLVPTADRREGVLA 252 + +A I+ANGPI+VRQAK AI++GL+ LA GLA E +AY + +PT DRREG+ A Sbjct: 189 MPKAEELAAAISANGPIAVRQAKFAINKGLETDLATGLAIEQKAYEQTIPTKDRREGLQA 248 Query: 253 FNERRKPNFQG 263 F E+R+ ++G Sbjct: 249 FQEKRRAVYKG 259 >BH0207 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Bha Bacillus halodurans Length = 259 Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 111/262 (42%), Positives = 152/262 (58%), Gaps = 6/262 (2%) Query: 3 TDFQTIKVERRDGDILLVTLHRPEASNAMNTQMGLDLVELFEGFSTDIEGLRAVILTGHG 62 T QTIK + ++T +RP+ N N QM LDL ++ + + +R VI TG G Sbjct: 4 TVLQTIK-----NHVAIITFNRPDQLNCFNYQMLLDLEQVIQEVKAN-PAIRTVIFTGAG 57 Query: 63 DKAFCAGGDLKQRNGMTDEAWQAQHLVFERMLRALLGCPIPVIGAINGAAYGGGCEIAAA 122 K+F AG DLK+R + + + + + P P I AING A GGG E+A A Sbjct: 58 GKSFSAGADLKERRTLDENQVRRNVNKIRSVFNQIEELPQPTIAAINGYALGGGFELALA 117 Query: 123 LDFVYASTNARFALTEVTLGIMPGGGGTQNLPRAVGERRAKELILSGQPFSAAEAERWGL 182 DF A A+ LTEVT I+PG GGTQ LPR +G +RAKE+IL+G+ +A EA+R G+ Sbjct: 118 CDFRLAVPEAKMGLTEVTWAIIPGAGGTQRLPRLIGSQRAKEMILTGRKVAAEEAQRLGI 177 Query: 183 VNRVLPPGELLEATFAIAHRIAANGPISVRQAKQAIHRGLQMSLADGLAFEIEAYNRLVP 242 + V LL +A +++ NGP++V QAK AIH G Q L GLA E +AY ++P Sbjct: 178 ILEVCDSKHLLTEAVRLAEKMSVNGPLAVIQAKYAIHYGCQTDLHTGLAIEAKAYETIIP 237 Query: 243 TADRREGVLAFNERRKPNFQGK 264 T DR E + AF E+R P F+GK Sbjct: 238 TEDRLEALQAFKEKRPPQFKGK 259 >CAC2712 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Cac Clostridium acetobutylicum Length = 261 Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 106/246 (43%), Positives = 151/246 (61%), Gaps = 1/246 (0%) Query: 13 RDGDILLVTLHRPEASNAMNTQMGLDLVELFEGFSTDIEGLRAVILTGHGDKAFCAGGDL 72 ++G + +VT++RP+A NA+N+ ++ + D E L AVILTG G+K+F AG D+ Sbjct: 10 KEGKVAVVTINRPKALNALNSDTLKEMDYVIGEIENDSEVL-AVILTGAGEKSFVAGADI 68 Query: 73 KQRNGMTDEAWQAQHLVFERMLRALLGCPIPVIGAINGAAYGGGCEIAAALDFVYASTNA 132 + M + ++ ++ R L PVI A+NG A GGGCEIA + D AS+NA Sbjct: 69 SEMKEMNTIEGRKFGILGNKVFRRLELLEKPVIAAVNGFALGGGCEIAMSCDIRIASSNA 128 Query: 133 RFALTEVTLGIMPGGGGTQNLPRAVGERRAKELILSGQPFSAAEAERWGLVNRVLPPGEL 192 RF EV LGI PG GGTQ L R VG AK+LI + Q A EA R GLVN+V+ P EL Sbjct: 129 RFGQPEVGLGITPGFGGTQRLSRLVGMGMAKQLIFTAQNIKADEALRIGLVNKVVEPSEL 188 Query: 193 LEATFAIAHRIAANGPISVRQAKQAIHRGLQMSLADGLAFEIEAYNRLVPTADRREGVLA 252 + IA++I +N P++V+ +KQAI+RG+Q + LAFE EA+ T D+++ + A Sbjct: 189 MNTAKEIANKIVSNAPVAVKLSKQAINRGMQCDIDTALAFESEAFGECFSTEDQKDAMTA 248 Query: 253 FNERRK 258 F E+RK Sbjct: 249 FIEKRK 254 >AGc562 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 288 Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 107/262 (40%), Positives = 167/262 (63%), Gaps = 5/262 (1%) Query: 3 TDFQTIKVERRDGDILLVTLHRPEASNAMNTQMGLDLVELFEGFSTDIEGLRAVILTGHG 62 D++ I VE+RD ++ ++TL+RP+ NA+N+ + +L + FS D + + A+I+TG Sbjct: 32 VDYEMILVEKRD-EVGVITLNRPKVLNALNSVLLKELRHILSSFSAD-DSIGAIIITGS- 88 Query: 63 DKAFCAGGDLKQRNGMTDEAWQAQHLVFERMLRALLGCPIPVIGAINGAAYGGGCEIAAA 122 +KAF AG D+K+ G+ + A F + PVI A++G A GGGCE+A Sbjct: 89 EKAFAAGADIKEMQGL--DFVDAYVGDFLGGWDEVAATRKPVIAAVSGFALGGGCELAMM 146 Query: 123 LDFVYASTNARFALTEVTLGIMPGGGGTQNLPRAVGERRAKELILSGQPFSAAEAERWGL 182 DF+ AS A+F E+TLG++PG GG+Q L RAVG+ +A +L+L+G+ AAEAER GL Sbjct: 147 CDFIIASDTAKFGQPEITLGVIPGMGGSQRLTRAVGKAKAMDLVLTGRMMDAAEAERAGL 206 Query: 183 VNRVLPPGELLEATFAIAHRIAANGPISVRQAKQAIHRGLQMSLADGLAFEIEAYNRLVP 242 V+R++P +L+E A RIA+ SV AK++++R ++ LA+GL +E A+ L Sbjct: 207 VSRIVPAADLMEVAVEAATRIASLSRASVLMAKESVNRSFEVPLAEGLRYERRAFQSLFA 266 Query: 243 TADRREGVLAFNERRKPNFQGK 264 T D++EG+ AF E+RKP F+ + Sbjct: 267 TEDQKEGMAAFVEKRKPAFRNR 288 >BH1135 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Bha Bacillus halodurans Length = 260 Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 108/259 (41%), Positives = 152/259 (58%), Gaps = 1/259 (0%) Query: 6 QTIKVERRDGDILLVTLHRPEASNAMNTQMGLDLVELFEGFSTDIEGLRAVILTGHGDKA 65 +T+ VE + VTL RPEA+NA++ Q+ L + E + E +RAV+ TG GDK Sbjct: 3 ETVGVEMLSSGVCKVTLIRPEAANALSVQLLEKLKDTLEALAFQKE-VRAVVFTGAGDKV 61 Query: 66 FCAGGDLKQRNGMTDEAWQAQHLVFERMLRALLGCPIPVIGAINGAAYGGGCEIAAALDF 125 FCAG DLK+R M +E + + + + P P I A+NG A GGG E+A A D Sbjct: 62 FCAGADLKERRRMEEEEVRRTVALIGETIEKVAKLPQPTIAAMNGTALGGGLELALACDL 121 Query: 126 VYASTNARFALTEVTLGIMPGGGGTQNLPRAVGERRAKELILSGQPFSAAEAERWGLVNR 185 A+ + + L E TL I+PG GGTQ LPR +G RAKE+I +G+ + AEA GL Sbjct: 122 RVAAEESVYGLPETTLAIIPGAGGTQRLPRLIGVGRAKEMIFTGKRITGAEAYLIGLAQY 181 Query: 186 VLPPGELLEATFAIAHRIAANGPISVRQAKQAIHRGLQMSLADGLAFEIEAYNRLVPTAD 245 P ++ +A +++ANGPI++ QAK+AI G++ LA GL E AY R + T D Sbjct: 182 ACPLAKVETLALDLAKQMSANGPIALAQAKKAIDNGIETDLATGLELEKLAYERTISTKD 241 Query: 246 RREGVLAFNERRKPNFQGK 264 R EG+ AF E+RKP + G+ Sbjct: 242 RLEGLEAFKEKRKPQYIGE 260