BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0120.0040.p         (171 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA139 [L] COG3464 Transposase and inactivated derivatives Atu ...   136   2e-32

>AGpA139 [L] COG3464 Transposase and inactivated derivatives Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 404

 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 82/102 (80%), Gaps = 2/102 (1%)

Query: 1   MTIGRDLLTKAEAVTVSAIEAGVPTLVEAREIIAEFHLMIRRKTEAGLIPWIERARASAS 60
           +T  RD LTK+E VT++AIE+GVP L+ AR+II +FHLMIRRK E  L  WI+RAR   S
Sbjct: 287 LTNSRDNLTKSETVTIAAIESGVPLLIAARDIITDFHLMIRRKAENQLTSWIDRAR--DS 344

Query: 61  LVASFSSGVAKDEAAVRAAITSPWSNGQTEGQITRLKLVRRQ 102
           LV+SF +GV KD  AVRAAI SPWSNGQTEGQIT+LKLV+RQ
Sbjct: 345 LVSSFGNGVVKDIQAVRAAIVSPWSNGQTEGQITKLKLVKRQ 386