BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0120.0036.p         (111 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L90946 [S] COG4420 Predicted membrane protein Lla Lactococcus la...    78   4e-15
Cgl1100 [S] COG4420 Predicted membrane protein Cgl Corynebacteri...    77   1e-14
AGc3054 [S] COG4420 Predicted membrane protein Atu Agrobacterium...    75   2e-14
Rv1231c [S] COG4420 Predicted membrane protein Mtu Mycobacterium...    71   7e-13
MT1269 [S] COG4420 Predicted membrane protein MtC Mycobacterium ...    71   7e-13

>L90946 [S] COG4420 Predicted membrane protein Lla Lactococcus lactis
          Length = 290

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 13/106 (12%)

Query: 3   NEQTHKVHLSPEDQERLRELRTQKPARNLPKLALTPGAMLADRVAETVGSWCFIIIQSVL 62
           NE+  K +    D E   +L+TQ+          T G  +AD+V E VGSW FI+    +
Sbjct: 84  NEELTKANFEIHDVEE--QLQTQE----------TIGERVADKVTEFVGSWAFILTYLGI 131

Query: 63  LGIWIMLNMIA-FIRHWDPFPFILLNLVLSFQAAYAAPIIMMSQNR 107
           L +W+ +N+   F   WD +PFILLNL LS  AA  AP+IMMSQNR
Sbjct: 132 LVVWMFVNVSGIFGVEWDKYPFILLNLFLSITAAMQAPLIMMSQNR 177


>Cgl1100 [S] COG4420 Predicted membrane protein Cgl Corynebacterium
           glutamicum
          Length = 193

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query: 37  TPGAMLADRVAETVGSWCFIIIQSVLLGIWIMLNMIAFIRHWDPFPFILLNLVLSFQAAY 96
           T GA  A++VA   G+  ++  Q++ + +WI LN+  +   WDP+PFILLNL  S QAAY
Sbjct: 26  TIGAY-AEKVARFFGTGQYLFWQTIFVVVWIFLNIGGWAWSWDPYPFILLNLAFSTQAAY 84

Query: 97  AAPIIMMSQNRQSE 110
           AAP+I+++QNRQ +
Sbjct: 85  AAPLILLAQNRQED 98


>AGc3054 [S] COG4420 Predicted membrane protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 217

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 6/102 (5%)

Query: 14  EDQERLRELRTQKP-ARNLPKLALTPGAMLADRVAETV----GSWCFIIIQSVLLGIWIM 68
           E + R+ EL  QK    +      + GA L DR+A+ +    GSW FI+     L  W +
Sbjct: 61  EVERRILELSHQKKLVSSDINAEFSAGASLGDRLADNIAKVGGSWGFILSFCFFLIFWAI 120

Query: 69  LNMIAFI-RHWDPFPFILLNLVLSFQAAYAAPIIMMSQNRQS 109
           +N I    R +DP+PFI LNL+LS  AA  APIIMMSQNRQ+
Sbjct: 121 INTIVLTTRAFDPYPFIFLNLLLSMLAAIQAPIIMMSQNRQA 162


>Rv1231c [S] COG4420 Predicted membrane protein Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 180

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 20  RELRTQKPARNL-PKLALTPGAMLADRVAETVGSWCFIIIQSVLLGIWIMLNMIAFIRHW 78
           R L T + +R L P+L         + +A   G+  ++++Q++L+  WI+LN+ A    W
Sbjct: 8   RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRW 67

Query: 79  DPFPFILLNLVLSFQAAYAAPIIMMSQNRQSE 110
           DP+PFILLNL  S QA+YAAP+I+++QNRQ +
Sbjct: 68  DPYPFILLNLAFSTQASYAAPLILLAQNRQEK 99


>MT1269 [S] COG4420 Predicted membrane protein MtC Mycobacterium
           tuberculosis CDC1551
          Length = 180

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 20  RELRTQKPARNL-PKLALTPGAMLADRVAETVGSWCFIIIQSVLLGIWIMLNMIAFIRHW 78
           R L T + +R L P+L         + +A   G+  ++++Q++L+  WI+LN+ A    W
Sbjct: 8   RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRW 67

Query: 79  DPFPFILLNLVLSFQAAYAAPIIMMSQNRQSE 110
           DP+PFILLNL  S QA+YAAP+I+++QNRQ +
Sbjct: 68  DPYPFILLNLAFSTQASYAAPLILLAQNRQEK 99