BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0119.0031.p         (128 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll5605 [U] COG5010 Flp pilus assembly protein TadD, contains TP...   104   5e-23
AGc369 [U] COG5010 Flp pilus assembly protein TadD, contains TPR...   101   5e-22
SMc02824 [U] COG5010 Flp pilus assembly protein TadD, contains T...   100   2e-21

>mll5605 [U] COG5010 Flp pilus assembly protein TadD, contains TPR repeats
           Mlo Mesorhizobium loti
          Length = 275

 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 65/86 (75%)

Query: 7   LLAGYGRALADNGNFQQAFDVLGRAHTPEDPDWRILSAQGAVLDQLDRHDEARQYYASAL 66
           +LA YG+ALA N  F+ A D + RA TPE PDW+++SA+ A+LDQL + D+ARQ Y  AL
Sbjct: 112 VLAAYGKALAANSQFEAALDAVRRAQTPEYPDWKLVSAEAAILDQLGQKDDARQLYRKAL 171

Query: 67  KIVPDDPSVLSNIGLSYLLSKDLPKA 92
           ++ P++PSVLSN+G+SY+L  DL  A
Sbjct: 172 ELKPNEPSVLSNLGMSYVLEGDLRTA 197


>AGc369 [U] COG5010 Flp pilus assembly protein TadD, contains TPR repeats
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 289

 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 62/85 (72%)

Query: 4   NKALLAGYGRALADNGNFQQAFDVLGRAHTPEDPDWRILSAQGAVLDQLDRHDEARQYYA 63
           ++ +LA YG++ A  G  +QA   + RA TP+ PDWR+ SA+GAVLDQL R +EAR  Y 
Sbjct: 125 DREVLAAYGKSQAAAGQLEQALSTIQRAQTPDRPDWRLYSAEGAVLDQLGRSNEARSRYR 184

Query: 64  SALKIVPDDPSVLSNIGLSYLLSKD 88
            AL + P+DPSVLSN+G+SY+LS D
Sbjct: 185 QALDLKPNDPSVLSNLGMSYVLSSD 209


>SMc02824 [U] COG5010 Flp pilus assembly protein TadD, contains TPR repeats
           Sme Sinorhizobium meliloti
          Length = 269

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 63/89 (70%)

Query: 4   NKALLAGYGRALADNGNFQQAFDVLGRAHTPEDPDWRILSAQGAVLDQLDRHDEARQYYA 63
           ++ +L  YG+A A  G  +QA   + RA TP+ PDW++ SA+GA+LDQL R  EAR  Y 
Sbjct: 110 DREVLGAYGKAQAAAGQLEQALATISRAQTPDRPDWKLKSAEGAILDQLGRSAEARLRYR 169

Query: 64  SALKIVPDDPSVLSNIGLSYLLSKDLPKA 92
            AL + P++PSVLSN+G+SYLL+KDL  A
Sbjct: 170 EALDLKPNEPSVLSNLGMSYLLTKDLRTA 198