BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0118.0028.p (207 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ydhC [K] COG1802 Transcriptional regulators Bsu Bacillus subt... 86 5e-17 Ta1394 [K] COG1802 Transcriptional regulators Tac Thermoplasma a... 77 3e-14 SSO1255 [K] COG1802 Transcriptional regulators Sso Sulfolobus so... 74 2e-13 SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 72 9e-13 RSp0436 [K] COG1802 Transcriptional regulators Rso Ralstonia sol... 71 2e-12 >BS_ydhC [K] COG1802 Transcriptional regulators Bsu Bacillus subtilis Length = 224 Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 13/194 (6%) Query: 1 LLEAIIDRTLLPGQRITQNELADRLGVSRQPISHALHLLHRQGLVAESGRRGFEVTQLDP 60 L + I + T PG+RI + +LA GVSR PI A+ LL + GL+ R GF +T L Sbjct: 20 LKKMIFNGTFKPGERINETQLAKSFGVSRSPIREAMRLLEKDGLLKADDRNGFSITSLTA 79 Query: 61 QRIRELYEVRGAIDALAARLAAARVKEDAVARTQLEAAL-EAGRAIDDGTPLARLIALDV 119 + + E+Y++R ++ LA L E+ + T LE L E +AI +GT +I L+ Sbjct: 80 KDVDEIYKIRIPLEQLAVELVIDEADEEEL--TILEKQLEETEKAIHNGTEDTEIIRLNQ 137 Query: 120 DFHSAIYRLAGNSAIEEMIAPQWPHMRRSMATVLAELDYRG-----SAWTEHETIAAHVF 174 FH + + N ++ ++ H+ + L+Y G + EH I V Sbjct: 138 KFHELLVDFSHNRHLKNLLE----HV-NDLIHFCRILNYTGDHRAETILREHRRIFEEVK 192 Query: 175 SGNAAAAEAAALAH 188 N AA+ LAH Sbjct: 193 KKNKEAAKQHVLAH 206 >Ta1394 [K] COG1802 Transcriptional regulators Tac Thermoplasma acidophilum Length = 217 Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 98/198 (49%), Gaps = 3/198 (1%) Query: 1 LLEAIIDRTLLPGQRITQNELADRLGVSRQPISHALHLLHRQGLVAESGRRGFEVTQLDP 60 +++ I+ L GQ I +N++ D VS+ PI A+ L + +V ++G+ F V+ ++P Sbjct: 15 IIDEIVSGRLRMGQIIDENKIKDVFNVSKTPIREAIISLENEEVVKKNGKSYF-VSFIEP 73 Query: 61 QRIRELYEVRGAIDALAARLAAARVKEDAVARTQLEAALEAGRAIDDGTPLARLIALDVD 120 + I +++E R ++++AA LAA R++ + Q+E + + ++ T L L+ Sbjct: 74 EEIDQIFEARRELESIAAFLAAQRMQRQELK--QMENIITKLKDVNGETDPIELANLNGK 131 Query: 121 FHSAIYRLAGNSAIEEMIAPQWPHMRRSMATVLAELDYRGSAWTEHETIAAHVFSGNAAA 180 FHS I + +GN IE + +R T+ ++ R + EH I + + +A Sbjct: 132 FHSLIAKASGNKYIESCVNSMRLKLRIVRVTLFTSIERREDEYKEHFGIFEAIKNKDADK 191 Query: 181 AEAAALAHAQTAGRMTEE 198 A + H T++ Sbjct: 192 ARSLMFNHETDVWEYTKK 209 >SSO1255 [K] COG1802 Transcriptional regulators Sso Sulfolobus solfataricus Length = 212 Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 12/200 (6%) Query: 1 LLEAIIDRTLLPGQRITQNELADRLGVSRQPISHALHLLHRQGLVAESGRRGFEVTQLDP 60 +LE II PG + + ELA L +SR PI AL L ++G++ ++G + F V L Sbjct: 11 ILEYIITGKYKPGNTLKEEELASLLKISRTPIREALARLEKEGVIVKNG-KSFTVIPLTE 69 Query: 61 QRIRELYEVRGAIDALAARLAAARVKEDAVARTQLEAALEAGRAIDDGTPLARLIALDVD 120 I +LYEVR +++L+A+LAA R +D + ++ L R + PL L L+ + Sbjct: 70 SDILQLYEVRINLESLSAKLAAIRASQDEI--NKIINVLNEIRGSANADPLT-LANLNGN 126 Query: 121 FHSAIYRLAGNSAIEEMIAPQWPHMRRSMATVLAELDYRGSAWTEHETIAAHVFSGNAAA 180 H AI + N I +++ ++ T+ R + EHE+I A Sbjct: 127 LHRAIAEASHNKYIVDILDSIRLKLKIVRITLFTSFQRRDEEFREHESIVI------AIK 180 Query: 181 AEAAALAHAQTAGRMTEEKL 200 + LA+ RM EEK+ Sbjct: 181 NRSPDLAYDMM--RMHEEKV 198 >SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 224 Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 84/191 (43%), Gaps = 4/191 (2%) Query: 4 AIIDRTLLPGQRITQNELADRLGVSRQPISHALHLLHRQGLVAESGRRGFEVTQLDPQRI 63 I+ PG+R+ + +LA R GVSR PI AL L GLV RRG V PQR+ Sbjct: 16 GIVTGEFEPGERLDETQLAMRFGVSRTPIREALMQLSAIGLVEIRPRRGAVVVDPAPQRV 75 Query: 64 RELYEVRGAIDALAARLAAAR-VKEDAVARTQLEAALEAGRAIDDGTPLARLIALDVDFH 122 E++EV ++ +A LAA R +ED+ A L AA E R R + FH Sbjct: 76 YEMFEVMAELEGMAGALAARRHTEEDSAA---LLAAHEKCREAVLSEETDRYYYENEIFH 132 Query: 123 SAIYRLAGNSAIEEMIAPQWPHMRRSMATVLAELDYRGSAWTEHETIAAHVFSGNAAAAE 182 AIY + + +EE +R L + ++ EH I + SGN A Sbjct: 133 RAIYTASHSGFLEEQCTTLHRRLRPYRRLQLRVRNRMKVSFREHGEIVEAILSGNTDGAR 192 Query: 183 AAALAHAQTAG 193 +H G Sbjct: 193 EGLRSHVAVQG 203 >RSp0436 [K] COG1802 Transcriptional regulators Rso Ralstonia solanacearum Length = 205 Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 87/184 (47%), Gaps = 9/184 (4%) Query: 5 IIDRTLLPGQRITQNELADRLGVSRQPISHALHLLHRQGLVAESGRRGFEVTQLDPQRIR 64 I++ + PG+R+T+ +LG SR P+ AL L GL+ G RG+ VT LD Q I Sbjct: 2 ILNMEIGPGERLTERWAEAQLGASRTPVRAALLRLETDGLICREG-RGWMVTPLDIQEIE 60 Query: 65 ELYEVRGAIDALAARLAAARVKEDAVARTQLEAALEAGRAIDDGTPLARLIALDVDFHSA 124 +L+ R ++ A +LAA +A+ R LEAALEA R GT L +FH Sbjct: 61 QLFVYREVLEVAAIQLAAKHANIEALDR--LEAALEACRP---GTSTREAHQLGTEFHVQ 115 Query: 125 IYRLAGNSAIEEMIAPQWPHMRRSMATVLAELDYRGSAWTEHETIAAHVFSGNAAAAEAA 184 + LA N I +A + R+ + W EH + A + G+AA A A Sbjct: 116 LAALAANDFIARGVADAMTRLSRAR---WLDTTPEHQGWDEHRAVLAALREGDAAKASAL 172 Query: 185 ALAH 188 H Sbjct: 173 VSQH 176