BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0118.0019.p         (217 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1315 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer...   197   1e-50
mlr2543 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...   159   4e-39
mlr0908 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...    66   6e-11
SMb20367 [K] COG1309 Transcriptional regulator Sme Sinorhizobium...    61   2e-09
slr0895 [K] COG1309 Transcriptional regulator Syn Synechocystis        59   7e-09

>PA1315 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 204

 Score =  197 bits (502), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/192 (50%), Positives = 126/192 (65%)

Query: 21  RWRRTQPAEVRVDDLMSAAAALFITKGIEATTIDDIAARAGVAKGTFYHYFSTKADVIIA 80
           R  RT+PAEVR+++LM+AA  LF+ KG++ATTI DI A AGVAKGTFYHYF  K D+++A
Sbjct: 11  RQPRTKPAEVRLEELMAAAQQLFLDKGVDATTISDIVAAAGVAKGTFYHYFQAKTDILLA 70

Query: 81  LRARFAQDFLARVAAAIAERAAHDHPGRLSAWLRGAVGTYLANVELHDVVFHDFPHHQRQ 140
           LR RF Q F  R+A A+    A+DHPGRL AW    +  YL    LHDVV+ +  HHQR 
Sbjct: 71  LRERFTQAFQQRIANAVEACPANDHPGRLRAWTESGLAGYLEGYRLHDVVYSEHHHHQRG 130

Query: 141 SQEKDDVIAQIVAVLEDGRTAGVWAFPDARSAALIVFDGMHAVADDAIVAGTRDPGPPCR 200
           +QE+D V+ Q+  +LE+G  AG W   + R  AL+++ G+H  ADDAI  G  D  P   
Sbjct: 131 NQERDRVLEQLAELLENGAAAGAWPLRNPRLNALLLYSGLHGAADDAIAGGRLDTQPLAG 190

Query: 201 LLEEMFTRMLAA 212
            L + F R+L A
Sbjct: 191 ELADAFLRLLGA 202


>mlr2543 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 201

 Score =  159 bits (402), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 119/193 (61%), Gaps = 3/193 (1%)

Query: 24  RTQPAEVRVDDLMSAAAALFITKGIEATTIDDIAARAGVAKGTFYHYFSTKADVIIALRA 83
           RT+PAEVR DD++ AA +LF+ KG+  TTID+IA RA VAKGTFY YF++K DV+ ALR 
Sbjct: 12  RTKPAEVRRDDILRAATSLFVAKGVGTTTIDEIATRAEVAKGTFYLYFTSKEDVVAALRE 71

Query: 84  RFAQDFLARVAAAIAERAAHDHPGRLSAWLRGAVGTYLANVELHDVVFHDFPHHQRQSQE 143
           RF   F AR+ +AI      D  GRL +++   +  YL + +LHDVVFHD    QR+ + 
Sbjct: 72  RFVAGFRARILSAIEACPPDDWTGRLKSFVGAGIAAYLDDHQLHDVVFHDHRPDQRRMKG 131

Query: 144 KDDVIAQIVAVLEDGRTAGVWAFPDARSAALIVFDGMHAVADDAIVAGTRDPGPPCRLLE 203
            + ++  + A+L  G  AG W+  D   AA+++F+G+H   D AI  G RD       L 
Sbjct: 132 DNPLLGDLSALLAAGTKAGAWSVDDPDLAAIVLFNGLHGAVDHAIECGVRDGSELAANLS 191

Query: 204 EMFTRMLAAPRPR 216
            +F RM+   RP+
Sbjct: 192 ALFLRMV---RPK 201


>mlr0908 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 236

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 29  EVRVDDLMSAAAALFITKGIEATTIDDIAARAGVAKGTFYHYFSTKADVIIALRARFAQD 88
           E+R +D++  A ALF+T+G +  +++D+ A AG++KG FYHYF++K  ++ AL  RFA+ 
Sbjct: 9   EIRREDILDHAQALFLTQGYDRASLNDVIASAGISKGAFYHYFASKEALLEALADRFARQ 68

Query: 89  FLARVAAAIAERAAHDHPGRLSAWL 113
            LA V   + +    D  GRL+  L
Sbjct: 69  ALAGV-QGVVDDPGLDPLGRLNGLL 92


>SMb20367 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 230

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 23  RRTQPAEVRVDDLMSAAAALFITKGIEATTIDDIAARAGVAKGTFYHYFSTKADVIIALR 82
           R  +  +VR ++L+  A  LF  +G E TT++D+   A V+KG FYHYF +K  ++ A+ 
Sbjct: 3   RVKKSPDVRTNELIGCAERLFFEQGYENTTVNDVIREANVSKGAFYHYFVSKEALLEAVA 62

Query: 83  ARFAQDFLARVAAAIAERAAHDHPGRLSAWLRGA 116
           AR A   L  +   + E  + D  G+L+A   G+
Sbjct: 63  ARMAHHSLKEL-QTVFEDPSLDAVGQLNALFAGS 95


>slr0895 [K] COG1309 Transcriptional regulator Syn Synechocystis
          Length = 187

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 1/106 (0%)

Query: 23  RRTQPAEVRVDDLMSAAAALFITKGIEATTIDDIAARAGVAKGTFYHYFSTKADVIIALR 82
           +R +   ++   L++AA  + +++G++A T+D +A+ AGV+KG   HYF TK  +I  + 
Sbjct: 5   KRLRSKSIQPSQLLTAANQVIVSQGVDALTLDAVASEAGVSKGGLLHYFPTKEALIAGMV 64

Query: 83  ARFAQDFLARVAAAIAERAAHDHPGR-LSAWLRGAVGTYLANVELH 127
            +    F+  +   +A   A D PG  + A++R +      N ELH
Sbjct: 65  QQALDRFVETLHQELANDPAPDTPGHWVRAYIRASALDDQENYELH 110