BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0073.p         (310 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMB1303 [K] COG0789 Predicted transcriptional regulators Nme Nei...    67   4e-11
NMA1517 [K] COG0789 Predicted transcriptional regulators NmA Nei...    67   4e-11
SPy1863 [K] COG0789 Predicted transcriptional regulators Spy Str...    67   7e-11
Cgl2557 [K] COG0789 Predicted transcriptional regulators Cgl Cor...    64   4e-10
RSp0137 [K] COG0789 Predicted transcriptional regulators Rso Ral...    63   7e-10

>NMB1303 [K] COG0789 Predicted transcriptional regulators Nme Neisseria
           meningitidis MC58
          Length = 135

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 13/121 (10%)

Query: 5   TYSIGEAARLSGISVRKLRFYSDQGLLPPAGRTASGYRVFTDGELVRLDLIRCLRDAGLG 64
           TY+  +AA   GIS   LRFY  +GLLP  GR   G R FTD +L  L L++CL++ G+ 
Sbjct: 2   TYTTAKAAEKIGISAHTLRFYDKEGLLPNIGRDEYGNRCFTDNDLQWLGLLQCLKNTGMS 61

Query: 65  LDAIR----------EVLTKQLSLVEALRLRLETLEAEIAAQRRVASALRAALRSPQLTE 114
           L  I+          + + ++LSL E    ++E ++ +IA  +R    L   L   Q  +
Sbjct: 62  LKDIKRFAECTVIGDDTIEERLSLFEN---QIENVKCQIAELKRYLDLLEYKLAFYQKAK 118

Query: 115 A 115
           A
Sbjct: 119 A 119


>NMA1517 [K] COG0789 Predicted transcriptional regulators NmA Neisseria
           meningitidis Z2491
          Length = 135

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 13/121 (10%)

Query: 5   TYSIGEAARLSGISVRKLRFYSDQGLLPPAGRTASGYRVFTDGELVRLDLIRCLRDAGLG 64
           TY+  +AA   GIS   LRFY  +GLLP  GR   G R FTD +L  L L++CL++ G+ 
Sbjct: 2   TYTTAKAAEKIGISAHTLRFYDKEGLLPNIGRDEYGNRCFTDNDLQWLGLLQCLKNTGMS 61

Query: 65  LDAIR----------EVLTKQLSLVEALRLRLETLEAEIAAQRRVASALRAALRSPQLTE 114
           L  I+          + + ++LSL E    ++E ++ +IA  +R    L   L   Q  +
Sbjct: 62  LKDIKRFAECTVIGDDTIEERLSLFEN---QIENVKCQIAELKRYLDLLEYKLAFYQKAK 118

Query: 115 A 115
           A
Sbjct: 119 A 119


>SPy1863 [K] COG0789 Predicted transcriptional regulators Spy
          Streptococcus pyogenes M1 GAS
          Length = 245

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 48/70 (68%)

Query: 6  YSIGEAARLSGISVRKLRFYSDQGLLPPAGRTASGYRVFTDGELVRLDLIRCLRDAGLGL 65
          YS GE A L+G+S+R +++Y  +G+L P   TA G R++TD +L +L +I  LRD G  +
Sbjct: 5  YSTGELANLAGVSIRTVQYYDQRGILIPTALTAGGRRLYTDSDLEQLRMICFLRDLGFSI 64

Query: 66 DAIREVLTKQ 75
          + IR+VL ++
Sbjct: 65 EQIRKVLAEE 74


>Cgl2557 [K] COG0789 Predicted transcriptional regulators Cgl
           Corynebacterium glutamicum
          Length = 251

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 2/107 (1%)

Query: 1   MTQRTYSIGEAARLSGISVRKLRFYSDQGLLPPAGRTASGYRVFTDGELVRLDLIRCLRD 60
           MT RT  IGEAA L G++ R LR +   GLL P+ RT + YR++T+ ++ R   I   R 
Sbjct: 1   MTDRT--IGEAAELLGVTTRTLRHWDSIGLLQPSWRTTTDYRLYTEDDVERALQILIYRA 58

Query: 61  AGLGLDAIREVLTKQLSLVEALRLRLETLEAEIAAQRRVASALRAAL 107
           AG+GL  I EVL +  S  + LR + E L  +I    R+  A+   L
Sbjct: 59  AGIGLKDIAEVLDQPDSANQHLRRQRELLVEQIGQLHRMVRAVDEIL 105


>RSp0137 [K] COG0789 Predicted transcriptional regulators Rso Ralstonia
          solanacearum
          Length = 152

 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%)

Query: 7  SIGEAARLSGISVRKLRFYSDQGLLPPAGRTASGYRVFTDGELVRLDLIRCLRDAGLGLD 66
           IGE AR+SG++  ++RFY   GLL PA R A+GYR +    L RL++I   +D G  L+
Sbjct: 2  KIGELARMSGVAASRIRFYEANGLLQPAQRQANGYREYAPQTLTRLEIILRAQDTGFSLE 61

Query: 67 AIREVL 72
           IR +L
Sbjct: 62 EIRALL 67