BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0064.p (497 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII1056 [J] COG0124 Histidyl-tRNA synthetase Bme Brucella meli... 615 e-176 AGc1210 [J] COG0124 Histidyl-tRNA synthetase Atu Agrobacterium t... 615 e-176 SMc00919 [J] COG0124 Histidyl-tRNA synthetase Sme Sinorhizobium ... 606 e-173 mlr6928 [J] COG0124 Histidyl-tRNA synthetase Mlo Mesorhizobium loti 580 e-165 CC3513 [J] COG0124 Histidyl-tRNA synthetase Ccr Caulobacter vibr... 501 e-141 >BMEII1056 [J] COG0124 Histidyl-tRNA synthetase Bme Brucella melitensis Length = 502 Score = 615 bits (1587), Expect = e-176, Method: Compositional matrix adjust. Identities = 323/488 (66%), Positives = 376/488 (77%), Gaps = 6/488 (1%) Query: 7 KPQKLKARLPRGLEDRGPAAINATRAMVEKIRAVYELYGFEPVETPAMEYTDALGKFLPD 66 K K+KARLPRG DR P + A M+ IR VY+LYGFEPVETP +EYTDALGKFLPD Sbjct: 4 KADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYDLYGFEPVETPLVEYTDALGKFLPD 63 Query: 67 QDRPNEGVFSFQDDDEQWISLRYDLTAPLARYVAENFDALPKPYRSYRFGYVFRNEKPGP 126 QDRPNEGVFSFQDDDEQW+SLRYDLTAPLARYVAENF+ LPKPYRSYR G+VFRNEKPGP Sbjct: 64 QDRPNEGVFSFQDDDEQWLSLRYDLTAPLARYVAENFETLPKPYRSYRNGWVFRNEKPGP 123 Query: 127 GRFRQFMQFDADTVGSATPAADAEICMMAADTMEALGIPRGSYVVKVNNRKVLDGVLESI 186 GRFRQFMQFDADTVG+ +ADAE+CMM ADT+E LGI RG Y ++VNNRKVLDGVL++I Sbjct: 124 GRFRQFMQFDADTVGAPNVSADAEMCMMMADTLERLGIQRGDYAIRVNNRKVLDGVLDAI 183 Query: 187 GL--RDDFSRKLIVLRAIDKFDRLGPEGVRALLGEGRKDESGDFTKGAGLTADAAERVLN 244 GL + +++L VLRAIDK D+ GPEGVR LLG+GR DESGDFTKGA L A E+VL Sbjct: 184 GLEGEGNAAKRLNVLRAIDKLDKFGPEGVRLLLGKGRLDESGDFTKGAQLPEAAIEKVLA 243 Query: 245 STCPQEGTNAEVIANLRK-LSDTAIGGEGISELEAISNLVTTSGYEGRIRIDPTVVRGLE 303 T A+ IANL+ ++ A G EG+ EL + L GYEGR++IDP+VVRGLE Sbjct: 244 FTAAGGADGAQTIANLQAVVAGNAKGEEGVQELADMQALFFAGGYEGRVKIDPSVVRGLE 303 Query: 304 YYTGPVYEVELLLDTKDEKGRPVRFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLQA 363 YYTGPV+E ELL D +E G+ V FGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRL Sbjct: 304 YYTGPVFEAELLFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLMT 363 Query: 364 ALTMLGQLDTQAEFGPVVVTVFDRD--RVADYQKMVAQLRQAGIRAELYLGNPKNMGNQL 421 AL LG+LD GPVVV V D+D ++ YQKMV+ LR+AGIRAE+Y+G M Q+ Sbjct: 364 ALKNLGKLDVSDTVGPVVVLVMDKDTQNLSRYQKMVSDLRKAGIRAEMYVGG-SGMKAQM 422 Query: 422 KYADRRNSPCVIIQGSDEKARGEVQIKDLIEGAKAAAAIASNQEWRETRPAQFSCAEADL 481 KYADRR +PCV+IQGS E+ GEVQIKDL+EG + +A I N WRE+RPAQ + E L Sbjct: 423 KYADRRAAPCVVIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWRESRPAQITVREDGL 482 Query: 482 VARVREVL 489 V VRE+L Sbjct: 483 VDAVREIL 490 >AGc1210 [J] COG0124 Histidyl-tRNA synthetase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 507 Score = 615 bits (1585), Expect = e-176, Method: Compositional matrix adjust. Identities = 327/498 (65%), Positives = 378/498 (75%), Gaps = 8/498 (1%) Query: 1 MAEKPKKPQKLKARLPRGLEDRGPAAINATRAMVEKIRAVYELYGFEPVETPAMEYTDAL 60 M+EK KKPQKLKARLPRG DR A I+AT MV+KIR VYELYGF+P+ETP EYTDAL Sbjct: 1 MSEKAKKPQKLKARLPRGFVDRSAADIHATNEMVDKIRRVYELYGFDPIETPLFEYTDAL 60 Query: 61 GKFLPDQDRPNEGVFSFQDDDEQWISLRYDLTAPLARYVAENFDALPKPYRSYRFGYVFR 120 GKFLPD DRPNEGVFS QDDD+QW+SLRYDLTAPLAR+VAENF+ + PYR+YR GYVFR Sbjct: 61 GKFLPDSDRPNEGVFSLQDDDDQWMSLRYDLTAPLARHVAENFNEIQLPYRTYRAGYVFR 120 Query: 121 NEKPGPGRFRQFMQFDADTVGSATPAADAEICMMAADTMEALGIPRGSYVVKVNNRKVLD 180 NEKPGPGRFRQFMQFDADTVG+A ADAE+CMM ADTMEALGI RG YV++VNNRKVLD Sbjct: 121 NEKPGPGRFRQFMQFDADTVGAAGVQADAEMCMMMADTMEALGIARGDYVIRVNNRKVLD 180 Query: 181 GVLESIGL--RDDFSRKLIVLRAIDKFDRLGPEGVRALLGEGRKDESGDFTKGAGLTADA 238 GV+E+IGL D+ R+L VLRAIDK D+ GPEGV+ LLG GRKDESGDFTKGAGL + Sbjct: 181 GVMEAIGLGGEDNAGRRLNVLRAIDKLDKFGPEGVKLLLGPGRKDESGDFTKGAGLGDEQ 240 Query: 239 AERVLNSTCPQE-GTNAEVIANLRKLSDTAIGGEGISELEAISNLVTTSGYEG-RIRIDP 296 E+VL ++ +A+ +A L ++ T+ G EG+ EL I LV+ +GY+ RI+IDP Sbjct: 241 IEKVLFFVGIKDYAASADDLAKL--VAGTSKGEEGVDELNTIGALVSGAGYDATRIKIDP 298 Query: 297 TVVRGLEYYTGPVYEVELLLDTKDEKGRPVRFGSVGGGGRYDGLVSRFRGEPVPATGFSI 356 +VVRGLEYYTGPVYE EL D +EKG V FGSVGGGGRYDGLVSRF G+PVPATGFSI Sbjct: 299 SVVRGLEYYTGPVYEAELTFDVTNEKGEKVVFGSVGGGGRYDGLVSRFMGQPVPATGFSI 358 Query: 357 GVSRLQAALTMLGQLDTQAEFGPVVVTVFDRD--RVADYQKMVAQLRQAGIRAELYLGNP 414 GVSRL AL LG+L PV++TV D D + YQ+ LR GIRAE+Y GN Sbjct: 359 GVSRLMTALKNLGKLGQVKPLAPVLITVMDGDVESMGRYQRFTQALRAEGIRAEMYQGNW 418 Query: 415 KNMGNQLKYADRRNSPCVIIQGSDEKARGEVQIKDLIEGAKAAAAIASNQEWRETRPAQF 474 K GNQLKYADR SP IIQG DE+A G VQIKDLIEG + + I N WRE R AQ Sbjct: 419 KKFGNQLKYADRLGSPIAIIQGGDERAEGVVQIKDLIEGKRLSGEIEDNASWREARVAQV 478 Query: 475 SCAEADLVARVREVLARH 492 S EA+LVA+VRE+L Sbjct: 479 SVPEAELVAKVREILEHQ 496 >SMc00919 [J] COG0124 Histidyl-tRNA synthetase Sme Sinorhizobium meliloti Length = 504 Score = 606 bits (1562), Expect = e-173, Method: Compositional matrix adjust. Identities = 324/498 (65%), Positives = 373/498 (74%), Gaps = 8/498 (1%) Query: 1 MAEKPKKPQKLKARLPRGLEDRGPAAINATRAMVEKIRAVYELYGFEPVETPAMEYTDAL 60 M EK KK QKL+ARLPRG DR A I A M+ KIR VYE YGF+PVETP EYTDAL Sbjct: 1 MNEKQKKTQKLRARLPRGFVDRSAADIRAVDEMIAKIREVYERYGFDPVETPLFEYTDAL 60 Query: 61 GKFLPDQDRPNEGVFSFQDDDEQWISLRYDLTAPLARYVAENFDALPKPYRSYRFGYVFR 120 GKFLPD DRPNEGVFS DDD+QW+SLRYDLTAPLAR+VAENF+ + PYR+YR GYVFR Sbjct: 61 GKFLPDSDRPNEGVFSLTDDDDQWLSLRYDLTAPLARHVAENFNEIQLPYRTYRAGYVFR 120 Query: 121 NEKPGPGRFRQFMQFDADTVGSATPAADAEICMMAADTMEALGIPRGSYVVKVNNRKVLD 180 NEKPGPGRFRQFMQFDADTVG+A ADAE+CMM ADTMEALGI RG YV++VNNRKVLD Sbjct: 121 NEKPGPGRFRQFMQFDADTVGAAGVQADAEMCMMMADTMEALGIARGDYVIRVNNRKVLD 180 Query: 181 GVLESIGL--RDDFSRKLIVLRAIDKFDRLGPEGVRALLGEGRKDESGDFTKGAGLTADA 238 GVLE+IGL + + +L VLRAIDK D+ GPEGVR LLGEGRKDESGDFTKGAGL + Sbjct: 181 GVLEAIGLGGVEQTNTRLTVLRAIDKLDKFGPEGVRLLLGEGRKDESGDFTKGAGLNEEQ 240 Query: 239 AERVLNST-CPQEGTNAEVIANLRKLSDTAIGGEGISELEAISNLVTTSGYEG-RIRIDP 296 ++L +A+ +A L ++ TA G EG++EL I LV ++GYE RI+IDP Sbjct: 241 IGKILFFVGITDYARSADELAAL--VAGTARGAEGVNELNTIRGLVLSAGYEADRIKIDP 298 Query: 297 TVVRGLEYYTGPVYEVELLLDTKDEKGRPVRFGSVGGGGRYDGLVSRFRGEPVPATGFSI 356 +VVRGLEYYTGPV+E EL +EKG V FGSVGGGGRYDGLVSRF G+PVPATGFSI Sbjct: 299 SVVRGLEYYTGPVFEAELQFAVTNEKGEKVVFGSVGGGGRYDGLVSRFMGQPVPATGFSI 358 Query: 357 GVSRLQAALTMLGQLDTQAEFGPVVVTVFDRD--RVADYQKMVAQLRQAGIRAELYLGNP 414 GVSRL AL LG+L + PVVV V DRD + YQ+ V LR AGIRAE+Y GN Sbjct: 359 GVSRLMTALKNLGKLGAEQVTAPVVVCVMDRDIESMGRYQRFVQDLRHAGIRAEMYQGNK 418 Query: 415 KNMGNQLKYADRRNSPCVIIQGSDEKARGEVQIKDLIEGAKAAAAIASNQEWRETRPAQF 474 KN G+QLKYADRR SP +IQG DE+A G VQIKDLIEG + + I N WRE R AQ Sbjct: 419 KNFGDQLKYADRRGSPIAVIQGGDERASGVVQIKDLIEGKRLSGEIEDNVAWREARVAQV 478 Query: 475 SCAEADLVARVREVLARH 492 S E +LVA+VR++LA Sbjct: 479 SVPEGELVAKVRQILAEQ 496 >mlr6928 [J] COG0124 Histidyl-tRNA synthetase Mlo Mesorhizobium loti Length = 500 Score = 580 bits (1495), Expect = e-165, Method: Compositional matrix adjust. Identities = 318/493 (64%), Positives = 369/493 (74%), Gaps = 15/493 (3%) Query: 7 KPQKLKARLPRGLEDRGPAAINATRAMVEKIRAVYELYGFEPVETPAMEYTDALGKFLPD 66 K +K KARLPRG DR I A M+ IR+VYELYGFEP + P +EYTDALGKFLPD Sbjct: 4 KSEKTKARLPRGFADRSAEDIRAVEKMMATIRSVYELYGFEPADQPLIEYTDALGKFLPD 63 Query: 67 QDRPNEGVFSFQDDDEQWISLRYDLTAPLARYVAENFDALPKPYRSYRFGYVFRNEKPGP 126 QDRPNEGVFSFQDDDEQW+SLRYDLTAP AR+VAEN++ LPKPYRSYR G+VFRNEKPGP Sbjct: 64 QDRPNEGVFSFQDDDEQWLSLRYDLTAPTARFVAENYERLPKPYRSYRSGWVFRNEKPGP 123 Query: 127 GRFRQFMQFDADTVGSATPAADAEICMMAADTMEALGIPRGSYVVKVNNRKVLDGVLESI 186 GRFRQFMQFDADT+G+ AADAE+ MM AD MEALGI RG YV++VNNRKVLDGVLE+I Sbjct: 124 GRFRQFMQFDADTIGTPGVAADAEMAMMMADVMEALGIKRGDYVIRVNNRKVLDGVLEAI 183 Query: 187 GL--RDDFSRKLIVLRAIDKFDRLGPEGVRALLGEGR----KDESGDFTKGAGLTADAAE 240 GL ++ R+L VLRAIDK D+LGPEGV+ LLG GR K+ GDF KGAGL AE Sbjct: 184 GLGGEENIGRRLTVLRAIDKLDKLGPEGVKLLLGPGRWDGGKEGEGDFAKGAGLNNGQAE 243 Query: 241 RVLNSTCPQEGTNAEVIANLRKLSDTAIGGEGISELEAISNLVTTSGY-EGRIRIDPTVV 299 VL +T NA+ A + A EG+ EL I LV +GY E RI +D +VV Sbjct: 244 AVLQATA----RNAQA-AQDSVVDSNATYQEGVGELATIEALVRAAGYGEDRIAMDRSVV 298 Query: 300 RGLEYYTGPVYEVELLLDTKDEKGRPVRFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVS 359 RGLEYYTGPV+E ELL + +E G+ VRFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVS Sbjct: 299 RGLEYYTGPVFEAELLAEIPNEDGQIVRFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVS 358 Query: 360 RLQAALTMLGQLDTQAEFGPVVVTVFDRD--RVADYQKMVAQLRQAGIRAELYLGNPKNM 417 RL AL LG+LD PVVV V D+D + YQKMV++LR AGIR+E+YLG M Sbjct: 359 RLMTALKNLGKLDNADVIAPVVVLVMDKDTESLGRYQKMVSELRAAGIRSEMYLGGA-GM 417 Query: 418 GNQLKYADRRNSPCVIIQGSDEKARGEVQIKDLIEGAKAAAAIASNQEWRETRPAQFSCA 477 QLKYADRR P IIQG DE+A+GE+QIKDLIEGA+ +A I N EWR RPAQ + A Sbjct: 418 KAQLKYADRRGCPVAIIQGGDERAKGELQIKDLIEGARMSAEITDNAEWRAARPAQVTVA 477 Query: 478 EADLVARVREVLA 490 E++LVA V+++LA Sbjct: 478 ESELVAEVKKILA 490 >CC3513 [J] COG0124 Histidyl-tRNA synthetase Ccr Caulobacter vibrioides Length = 495 Score = 501 bits (1290), Expect = e-141, Method: Compositional matrix adjust. Identities = 271/491 (55%), Positives = 341/491 (69%), Gaps = 5/491 (1%) Query: 2 AEKPKKPQKLKARLPRGLEDRGPAAINATRAMVEKIRAVYELYGFEPVETPAMEYTDALG 61 +E+P + +AR PRG D+ + A RA++E + AVYE YGFE ++T A EY DALG Sbjct: 5 SEQPNTDFRPEARAPRGFADKRARDLRAERAILEAVSAVYERYGFEALDTGAFEYADALG 64 Query: 62 KFLPDQDRPNEGVFSFQDDDEQWISLRYDLTAPLARYVAENFDALPKPYRSYRFGYVFRN 121 KFLPD DRPNEGVF+ QDDD+QW++LRYDLTAPLAR+ A+N++ LPKP+R Y FG V+RN Sbjct: 65 KFLPDSDRPNEGVFALQDDDDQWMALRYDLTAPLARFAAQNWETLPKPFRRYAFGPVWRN 124 Query: 122 EKPGPGRFRQFMQFDADTVGSATPAADAEICMMAADTMEALGIPRGSYVVKVNNRKVLDG 181 EKPGPGRFRQF+Q DADTVGSA P ADAEI MA + +EA G+PRG+ V+K+NNRK+L+G Sbjct: 125 EKPGPGRFRQFIQCDADTVGSARPEADAEIIAMAVEGLEAAGLPRGTAVLKINNRKLLNG 184 Query: 182 VLESIGLRDDFSRKLIVLRAIDKFDRLGPEGVRALLGEGRKDESGDFTKGAGLTADAAER 241 +L + G D +KL VLRA+DK DRLG +GVR LLGEGR DESGDFTKGAGL A ++ Sbjct: 185 LLTAAGA-DSAGQKLAVLRAVDKLDRLGVDGVRLLLGEGRLDESGDFTKGAGLKGKAVDQ 243 Query: 242 VLNST-CPQEGTNAEVIANL-RKLSDTAIGGEGISELEAISNLVTTSGY-EGRIRIDPTV 298 VL+ G A + N+ R ++ +A G EG+ EL I +++ G + + IDP++ Sbjct: 244 VLDFVQAGSTGGRAATLDNIARVVAGSAEGDEGLLELSRIDAALSSLGIADDQAFIDPSI 303 Query: 299 VRGLEYYTGPVYEVELLLDTKDEKGRPVRFGSVGGGGRYDGLVSRFRGEPVPATGFSIGV 358 VRGLEYYTG V+E ELLL T DEKG V FGS+GGGGRYD LV+RF G PATGFS GV Sbjct: 304 VRGLEYYTGAVFEAELLLSTTDEKGNKVSFGSIGGGGRYDDLVARFTGNVTPATGFSFGV 363 Query: 359 SRLQAALTMLGQLDTQAEFGPVVVTVFDRDRVADYQKMVAQLRQAGIRAELYLGNPKNMG 418 SRL AAL G+ A GPVVV FD+ + +Y +V QLR AGI AE+YLG M Sbjct: 364 SRLAAALRAAGREPGGAARGPVVVITFDQAHMGEYFSVVGQLRAAGIAAEVYLGT-SGMK 422 Query: 419 NQLKYADRRNSPCVIIQGSDEKARGEVQIKDLIEGAKAAAAIASNQEWRETRPAQFSCAE 478 Q+KYADRR +P V++ G DE A G V IKDL G AA + N W+ RP Q + Sbjct: 423 PQMKYADRRGAPAVVMLGGDEIAAGTVTIKDLDAGRMAAEGLTDNAAWKAERPGQQTIPR 482 Query: 479 ADLVARVREVL 489 LV VR+++ Sbjct: 483 DQLVDAVRKII 493