BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0062.p (292 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02896 [EH] COG0115 Branched-chain amino acid aminotransferase... 353 4e-97 RSp1358 [EH] COG0115 Branched-chain amino acid aminotransferase/... 322 7e-88 RSp1327 [EH] COG0115 Branched-chain amino acid aminotransferase/... 322 7e-88 Rv2210c [EH] COG0115 Branched-chain amino acid aminotransferase/... 303 3e-82 MT2266 [EH] COG0115 Branched-chain amino acid aminotransferase/4... 303 3e-82 >SMc02896 [EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Sme Sinorhizobium meliloti Length = 365 Score = 353 bits (905), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 174/250 (69%), Positives = 207/250 (82%), Gaps = 1/250 (0%) Query: 5 FDIQPSPNPTSDKDRAAKLVDPGFGRVFTDHMAIVRYSQGKGWHSARVEARASFPLDPAG 64 F + +P ++ +R A L +PGFGRVFTDHMA +RYS+G+GWH A++ R +F LDP+ Sbjct: 9 FLFEQNPTRVANSERDALLANPGFGRVFTDHMATIRYSEGRGWHDAKIGPRKAFDLDPST 68 Query: 65 AVLHYAQEIFEGLKAYKRDDGGVNLFRPDANARRFHDSAERMAMAPLPEDLFIDAVEQLV 124 VLHYAQEIFEG+KAY+ DGG LFRPDANARRF +SA R+AMAPLPE+LF+ +V +LV Sbjct: 69 LVLHYAQEIFEGMKAYRLPDGGATLFRPDANARRFRNSALRLAMAPLPEELFVQSVRELV 128 Query: 125 RIDRAWIPGGEGS-LYLRPFMIASEIFLGVKPSAEYIFSVIASPVGSYFKGGPAPVSIWV 183 RIDR WIP GEG+ LYLRPFMIA+E+ LGVKPSAEY++ VIAS VGSYFKGG ++IWV Sbjct: 129 RIDRDWIPAGEGAALYLRPFMIATEVLLGVKPSAEYLYCVIASSVGSYFKGGAPAITIWV 188 Query: 184 SENYTRAAIGGTGAVKCGGNYAASLRAQAEAIERGCDQVVFLDAVERRYIEELGGMNVFF 243 SENYTRAA GGTG KCGGNYAASL AQAEA++ GC+QVVFLDAVERR++EELGGMNVFF Sbjct: 189 SENYTRAAPGGTGEAKCGGNYAASLAAQAEAMQEGCEQVVFLDAVERRFVEELGGMNVFF 248 Query: 244 AFDDGSLLTP 253 F DGSL TP Sbjct: 249 GFRDGSLQTP 258 >RSp1358 [EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Rso Ralstonia solanacearum Length = 354 Score = 322 bits (824), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 153/252 (60%), Positives = 187/252 (74%), Gaps = 2/252 (0%) Query: 3 LKFDIQPSPNPTSDKDRAAKLVDPGFGRVFTDHMAIVRYSQGKGWHSARVEARASFPLDP 62 ++F + PT + R L P G+VFTDHM ++++ GWH AR+ R F LDP Sbjct: 1 MQFSNTSTTRPTPIEQRKEALRVPKLGKVFTDHMVTIQWTSEDGWHDARIRPREPFSLDP 60 Query: 63 AGAVLHYAQEIFEGLKAYKRDDGGVNLFRPDANARRFHDSAERMAMAPLPEDLFIDAVEQ 122 A AVLHYAQEIFEG+KAY + DGGV LFRP NARRF+ SA RM M +PE +F++A+EQ Sbjct: 61 ASAVLHYAQEIFEGMKAYAQPDGGVVLFRPVDNARRFNASATRMTMPTIPETVFVEAIEQ 120 Query: 123 LVRIDRAWIPGGEG-SLYLRPFMIASEIFLGVKPSAEYIFSVIASPVGSYFKGGPAPVSI 181 L+R+D AW+P GEG SLYLRPFM ASE FLGV+P+ ++ F VIASP G+YFKGG P+++ Sbjct: 121 LLRVDGAWVPSGEGTSLYLRPFMFASESFLGVRPATQFTFCVIASPAGAYFKGGAEPITV 180 Query: 182 WVSENYTRAAIGGTGAVKCGGNYAASLRAQAEAIERGCDQVVFLDAVERRYIEELGGMNV 241 W+SE+Y+RAA GGTGA KCGGNYA L AQAEA GCDQV FLDA E R+IEELGGMNV Sbjct: 181 WISEHYSRAAKGGTGAAKCGGNYAGGLIAQAEATRNGCDQVAFLDAAESRWIEELGGMNV 240 Query: 242 FFAFDDGSLLTP 253 FF DG L+TP Sbjct: 241 FFVV-DGVLVTP 251 >RSp1327 [EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Rso Ralstonia solanacearum Length = 354 Score = 322 bits (824), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 153/252 (60%), Positives = 187/252 (74%), Gaps = 2/252 (0%) Query: 3 LKFDIQPSPNPTSDKDRAAKLVDPGFGRVFTDHMAIVRYSQGKGWHSARVEARASFPLDP 62 ++F + PT + R L P G+VFTDHM ++++ GWH AR+ R F LDP Sbjct: 1 MQFSNTSTTRPTPIEQRKEALRVPKLGKVFTDHMVTIQWTSEDGWHDARIRPREPFSLDP 60 Query: 63 AGAVLHYAQEIFEGLKAYKRDDGGVNLFRPDANARRFHDSAERMAMAPLPEDLFIDAVEQ 122 A AVLHYAQEIFEG+KAY + DGGV LFRP NARRF+ SA RM M +PE +F++A+EQ Sbjct: 61 ASAVLHYAQEIFEGMKAYAQPDGGVVLFRPVDNARRFNASATRMTMPTIPETVFVEAIEQ 120 Query: 123 LVRIDRAWIPGGEG-SLYLRPFMIASEIFLGVKPSAEYIFSVIASPVGSYFKGGPAPVSI 181 L+R+D AW+P GEG SLYLRPFM ASE FLGV+P+ ++ F VIASP G+YFKGG P+++ Sbjct: 121 LLRVDGAWVPSGEGTSLYLRPFMFASESFLGVRPATQFTFCVIASPAGAYFKGGAEPITV 180 Query: 182 WVSENYTRAAIGGTGAVKCGGNYAASLRAQAEAIERGCDQVVFLDAVERRYIEELGGMNV 241 W+SE+Y+RAA GGTGA KCGGNYA L AQAEA GCDQV FLDA E R+IEELGGMNV Sbjct: 181 WISEHYSRAAKGGTGAAKCGGNYAGGLIAQAEATRNGCDQVAFLDAAESRWIEELGGMNV 240 Query: 242 FFAFDDGSLLTP 253 FF DG L+TP Sbjct: 241 FFVV-DGVLVTP 251 >Rv2210c [EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Mtu Mycobacterium tuberculosis H37Rv Length = 368 Score = 303 bits (777), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 147/262 (56%), Positives = 189/262 (72%), Gaps = 5/262 (1%) Query: 2 TLKFDIQPSPNPTSDKDRAAKLVDPGFGRVFTDHMAIVRYSQGKGWHSARVEARASFPLD 61 +L+F + + NP +D R + L +PGFG+ TDHM + Y++G+GWH+ARV LD Sbjct: 5 SLQFTVLRAVNPATDAQRESMLREPGFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELD 64 Query: 62 PAGAVLHYAQEIFEGLKAYKRDDGGVNLFRPDANARRFHDSAERMAMAPLPEDLFIDAVE 121 P+ VLHYAQE+FEGLKAY+ DG + FR DANA R SA R+A+ LP+ +FI+++ Sbjct: 65 PSAIVLHYAQEVFEGLKAYRWADGSIVSFRADANAARLRSSARRLAIPELPDAVFIESLR 124 Query: 122 QLVRIDRAWIPG--GEGSLYLRPFMIASEIFLGVKPSAEYIFSVIASPVGSYFKGGPAPV 179 QL+ +D+AW+PG GE +LYLRPF+ A+E LGV+P+ +Y + +IASP G+YFKGG APV Sbjct: 125 QLIAVDKAWVPGAGGEEALYLRPFIFATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPV 184 Query: 180 SIWVSENYTRAAIGGTGAVKCGGNYAASLRAQAEAIERGCDQVVFLDAVERRYIEELGGM 239 S+WVS Y RA GGTGA K GGNYAASL AQAEA E GCDQVV+LDAVERRYIEE+GGM Sbjct: 185 SVWVSTEYVRACPGGTGAAKFGGNYAASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGM 244 Query: 240 NVFFAFDDGS---LLTPSCPAS 258 N+FF G L+TP S Sbjct: 245 NIFFVLGSGGSARLVTPELSGS 266 >MT2266 [EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase MtC Mycobacterium tuberculosis CDC1551 Length = 368 Score = 303 bits (777), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 147/262 (56%), Positives = 189/262 (72%), Gaps = 5/262 (1%) Query: 2 TLKFDIQPSPNPTSDKDRAAKLVDPGFGRVFTDHMAIVRYSQGKGWHSARVEARASFPLD 61 +L+F + + NP +D R + L +PGFG+ TDHM + Y++G+GWH+ARV LD Sbjct: 5 SLQFTVLRAVNPATDAQRESMLREPGFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELD 64 Query: 62 PAGAVLHYAQEIFEGLKAYKRDDGGVNLFRPDANARRFHDSAERMAMAPLPEDLFIDAVE 121 P+ VLHYAQE+FEGLKAY+ DG + FR DANA R SA R+A+ LP+ +FI+++ Sbjct: 65 PSAIVLHYAQEVFEGLKAYRWADGSIVSFRADANAARLRSSARRLAIPELPDAVFIESLR 124 Query: 122 QLVRIDRAWIPG--GEGSLYLRPFMIASEIFLGVKPSAEYIFSVIASPVGSYFKGGPAPV 179 QL+ +D+AW+PG GE +LYLRPF+ A+E LGV+P+ +Y + +IASP G+YFKGG APV Sbjct: 125 QLIAVDKAWVPGAGGEEALYLRPFIFATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPV 184 Query: 180 SIWVSENYTRAAIGGTGAVKCGGNYAASLRAQAEAIERGCDQVVFLDAVERRYIEELGGM 239 S+WVS Y RA GGTGA K GGNYAASL AQAEA E GCDQVV+LDAVERRYIEE+GGM Sbjct: 185 SVWVSTEYVRACPGGTGAAKFGGNYAASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGM 244 Query: 240 NVFFAFDDGS---LLTPSCPAS 258 N+FF G L+TP S Sbjct: 245 NIFFVLGSGGSARLVTPELSGS 266