BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0058.p         (52 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI0493 [TK] COG0745 Response regulators consisting of a CheY-l...    74   1e-13
AGc4009 [TK] COG0745 Response regulators consisting of a CheY-li...    70   9e-13
SMc01593 [TK] COG0745 Response regulators consisting of a CheY-l...    69   3e-12
mlr2666 [TK] COG0745 Response regulators consisting of a CheY-li...    69   3e-12
CC2931 [TK] COG0745 Response regulators consisting of a CheY-lik...    58   6e-09

>BMEI0493 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Bme
           Brucella melitensis
          Length = 241

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 40/49 (81%), Gaps = 1/49 (2%)

Query: 1   VPRAELT-SGGTVNERAVDVQINRLRRKIEHDPANPLFLQAVRGIGYRL 48
           +PR ELT   G V ER +DVQINRLRRKIE DPANP++LQ VRGIGY+L
Sbjct: 190 IPRHELTGQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKL 238


>AGc4009 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 239

 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 1   VPRAELTSGGT-VNERAVDVQINRLRRKIEHDPANPLFLQAVRGIGYRL 48
           +PR EL    + V ER +DVQINRLRRKIE DPANP++LQ VRGIGYRL
Sbjct: 188 IPRHELVEAESEVGERTIDVQINRLRRKIEDDPANPVYLQTVRGIGYRL 236


>SMc01593 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Sme
           Sinorhizobium meliloti
          Length = 234

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 38/49 (77%), Gaps = 1/49 (2%)

Query: 1   VPRAELT-SGGTVNERAVDVQINRLRRKIEHDPANPLFLQAVRGIGYRL 48
           +PR EL      V ER +DVQINRLRRKIE DP+NP++LQ VRGIGYRL
Sbjct: 183 IPRHELIGDDAEVGERTIDVQINRLRRKIEDDPSNPVWLQTVRGIGYRL 231


>mlr2666 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Mlo
           Mesorhizobium loti
          Length = 218

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 1   VPRAELTSGGT-VNERAVDVQINRLRRKIEHDPANPLFLQAVRGIGYRL 48
           +PR EL    + V ER +DVQINRLRRKIE DP+NP++LQ VRGIGYRL
Sbjct: 167 IPRHELVGDDSEVGERTIDVQINRLRRKIERDPSNPVWLQTVRGIGYRL 215


>CC2931 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Ccr
           Caulobacter vibrioides
          Length = 233

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 29/34 (85%)

Query: 15  RAVDVQINRLRRKIEHDPANPLFLQAVRGIGYRL 48
           RAVDVQ+ RLRRKIE DP NP +LQ VRG+GYRL
Sbjct: 197 RAVDVQVTRLRRKIEPDPKNPRYLQTVRGVGYRL 230