BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0057.p (461 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc01595 [T] COG0642 Signal transduction histidine kinase Sme Si... 524 e-148 mlr2667 [T] COG0642 Signal transduction histidine kinase Mlo Mes... 505 e-143 BMEI0492 [T] COG0642 Signal transduction histidine kinase Bme Br... 490 e-138 AGc4011 [T] COG0642 Signal transduction histidine kinase Atu Agr... 469 e-132 CC2932 [T] COG0642 Signal transduction histidine kinase Ccr Caul... 388 e-107 >SMc01595 [T] COG0642 Signal transduction histidine kinase Sme Sinorhizobium meliloti Length = 460 Score = 524 bits (1350), Expect = e-148, Method: Compositional matrix adjust. Identities = 249/429 (58%), Positives = 333/429 (77%), Gaps = 2/429 (0%) Query: 34 PTGLYARALLIMIVPMVILQTVVAFVFMERHWNTVTRRLSAAVVSDIAALIDVYKSYPQD 93 P GLYAR++LI+++PMV+LQ+VVAFVFMERHW VT+RLS+AV +DIAA++D+ ++P++ Sbjct: 31 PMGLYARSILIVVIPMVLLQSVVAFVFMERHWQLVTQRLSSAVTNDIAAIVDLITTFPRE 90 Query: 94 KDRAQLRRIAQ-KLQLVVDFLPAGDMPPPGPKPFFSLLDQTLSVQLGRQISRPFWIDTVG 152 D Q+ RIA+ +L L + P G++PPP PKPFF +LDQ LS ++ QI RPFWIDTVG Sbjct: 91 GDIDQIVRIARDQLDLNITVEPGGELPPPRPKPFFEILDQILSEEISDQIRRPFWIDTVG 150 Query: 153 KSNLVEIRVQL-DDSVMRIFAQRSAAYASNSEIFIFWMLGTSTILLIVAVLFLRNQIKPI 211 S +VEIR++L DD ++R++A+R+ AYASN+ IF+ WM+G S +LL +A+LFLR QI+PI Sbjct: 151 NSKIVEIRIKLEDDRILRVYARRNQAYASNTHIFLVWMVGASLVLLTIAILFLRGQIRPI 210 Query: 212 LRLADAAESFGKGREAPNFRPRGAREVRRAAQAFIEMKARVERSIEQRTAMLAGVSHDLR 271 L LA AAESFGKG++ +F PRGA E+RRA AFI M+ R+ER IEQRTAML GVSHDLR Sbjct: 211 LALASAAESFGKGQKIDDFAPRGANEIRRAGLAFILMRERIERQIEQRTAMLTGVSHDLR 270 Query: 272 TILTRFKLELALIGEGPEIDAMRKDVDEMSMMLEDYLAFARGDSGEVAQPTDMALALEEL 331 TILTRFKL+LAL+G P+++++ +DV++M MLE YLAFARGD+ E ++ + L Sbjct: 271 TILTRFKLQLALVGNNPDLESLNQDVEDMQNMLEGYLAFARGDAEEDVGRLKLSDLMARL 330 Query: 332 RSDAERHGHTATVAFHGLPVVTVKPASFKRCLANLVSNAARHANTISITGHRDHRYLNVT 391 ++AE +G T T A G + V+P +F R ++NL SNA R+ANT+ I + ++L +T Sbjct: 331 AAEAELYGKTLTTAIQGENEIHVRPNAFTRLVSNLASNAYRYANTVHIEARQSAKWLTIT 390 Query: 392 VDDDGPGIPADMREEVFKPFLRLDDARNQDEGGTGLGLAIARDIARSHGGDIMLSESPMG 451 VDDDGPGIP RE+VFKPF RLD+ARN D GTGLGLA+ARDIARSHGG++ L++SP+G Sbjct: 391 VDDDGPGIPERSREDVFKPFFRLDEARNLDSSGTGLGLAVARDIARSHGGNVTLADSPLG 450 Query: 452 GLRAVVRVP 460 GLRA VRVP Sbjct: 451 GLRATVRVP 459 >mlr2667 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium loti Length = 471 Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust. Identities = 261/432 (60%), Positives = 333/432 (77%), Gaps = 3/432 (0%) Query: 32 WMPTGLYARALLIMIVPMVILQTVVAFVFMERHWNTVTRRLSAAVVSDIAALIDVYKSYP 91 +MP LYAR+L+I+I PM++LQ+VVAFVFMERHW TVT+RLS A V DIAA+ID+ ++YP Sbjct: 39 YMPKRLYARSLIIVIAPMILLQSVVAFVFMERHWATVTQRLSQATVRDIAAIIDLIETYP 98 Query: 92 QDKDRAQLRRIAQ-KLQLVVDFLPAGDMPPPGPKPFFSLLDQTLSVQLGRQISRPFWIDT 150 D D A + RIAQ ++QL VD LP +PPPGPKPFFS+LD LS ++ RQI+RPFWIDT Sbjct: 99 HDADYANVIRIAQDRMQLKVDLLPPDPLPPPGPKPFFSILDDVLSSEITRQINRPFWIDT 158 Query: 151 VGKSNLVEIRVQLDDSVMRIFAQRSAAYASNSEIFIFWMLGTSTILLIVAVLFLRNQIKP 210 VG SN+VE+RVQL++ V+R+F +RS AYASN+ IF+ WM+GTS +LL++A+ FLRNQI+P Sbjct: 159 VGNSNIVEVRVQLENKVLRVFVRRSQAYASNTHIFLIWMVGTSLVLLMIAIPFLRNQIRP 218 Query: 211 ILRLADAAESFGKGREAP-NFRPRGAREVRRAAQAFIEMKARVERSIEQRTAMLAGVSHD 269 IL LA+AAESFGKGR P +FRPRGA EVRRA AFI+M+ R+ER I+QRTAML GVSHD Sbjct: 219 ILTLAEAAESFGKGRPMPRDFRPRGAEEVRRAGFAFIQMRERIERQIDQRTAMLTGVSHD 278 Query: 270 LRTILTRFKLELALIGEGPEIDA-MRKDVDEMSMMLEDYLAFARGDSGEVAQPTDMALAL 328 LRTILTRFKL+LAL G E A + +D+D+M MLE YLAFARG++ E D+ Sbjct: 279 LRTILTRFKLQLALAGGKTETKAALNQDIDDMQSMLEGYLAFARGEASEDPGRFDLEAYF 338 Query: 329 EELRSDAERHGHTATVAFHGLPVVTVKPASFKRCLANLVSNAARHANTISITGHRDHRYL 388 ++L +A + G P V V+P +F R L+N++ NA R+A T+ ++ L Sbjct: 339 QKLSDEAALRKCKLSTTLSGDPTVHVRPNAFARLLSNVIGNAFRYAKTVEVSADHGRGSL 398 Query: 389 NVTVDDDGPGIPADMREEVFKPFLRLDDARNQDEGGTGLGLAIARDIARSHGGDIMLSES 448 VT+DD+GPGIPAD RE+VFKPF+RLD+ARN D GTGLGL+IARDIARSHGGDI L +S Sbjct: 399 VVTIDDNGPGIPADRREDVFKPFVRLDEARNLDASGTGLGLSIARDIARSHGGDITLGDS 458 Query: 449 PMGGLRAVVRVP 460 P+GGLRAV++VP Sbjct: 459 PLGGLRAVIKVP 470 >BMEI0492 [T] COG0642 Signal transduction histidine kinase Bme Brucella melitensis Length = 447 Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust. Identities = 256/439 (58%), Positives = 326/439 (74%), Gaps = 7/439 (1%) Query: 29 FKSW----MPTGLYARALLIMIVPMVILQTVVAFVFMERHWNTVTRRLSAAVVSDIAALI 84 F W MP GLYAR+L+I+I PMV+LQ+V+A+VFMERHW VT RLS AVV DIAA+I Sbjct: 8 FSRWLTRIMPKGLYARSLIIIIAPMVLLQSVIAYVFMERHWQMVTERLSTAVVRDIAAII 67 Query: 85 DVYKSYPQDKDRAQLRRIAQ-KLQLVVDFLPAGDMPPPGPKPFFSLLDQTLSVQLGRQIS 143 D+ ++YPQ+ L RIAQ +L L + LP +PPPGPKPFF++LD LS ++ RQI+ Sbjct: 68 DLLETYPQEPGYDNLIRIAQQRLALNISILPPDPLPPPGPKPFFAILDYFLSEEITRQIN 127 Query: 144 RPFWIDTVGKSNLVEIRVQLDDSVMRIFAQRSAAYASNSEIFIFWMLGTSTILLIVAVLF 203 RPFWIDTVG S+L+EIR++L+D V+R+FA+RS AYASN+ IF+ WM+GT+ +LLI+A+ F Sbjct: 128 RPFWIDTVGDSDLIEIRIKLEDKVLRVFARRSQAYASNTGIFLTWMVGTALVLLIIAIAF 187 Query: 204 LRNQIKPILRLADAAESFGKGREAPN-FRPRGAREVRRAAQAFIEMKARVERSIEQRTAM 262 LRNQIKPI +LA AAESFGKGR P F PRGA EVRRA AFI+M++R+ER IEQRTAM Sbjct: 188 LRNQIKPIQQLAQAAESFGKGRPMPEGFHPRGAEEVRRAGLAFIQMRSRIERQIEQRTAM 247 Query: 263 LAGVSHDLRTILTRFKLELALIGEGPEIDAMRKDVDEMSMMLEDYLAFARGDSGEVAQPT 322 L+GVSHDLRTILTRFKL+LAL G + + + +D+ +M MLE YLAFARG+ E Sbjct: 248 LSGVSHDLRTILTRFKLQLALAGHSIDTEPLNQDIADMQTMLEGYLAFARGEGAEETATF 307 Query: 323 DMALALEELRSDAERHGHTATVAFHGLPVVTVKPASFKRCLANLVSNAARHANTISITGH 382 D+ E+L S+A G + V+P +F R ++NLVSNA RHA + ++ Sbjct: 308 DVTRLCEKLESEARLRERGFKYTIEGDREINVRPNAFSRLVSNLVSNAFRHAQNVELSIS 367 Query: 383 RDHRYLNVTVDDDGPGIPADMREEVFKPFLRLDDARNQDEGGT-GLGLAIARDIARSHGG 441 +L V VDDDGPG+P + RE+VFKPF+RLD+AR QD GGT GLGLAIARDIARSHGG Sbjct: 368 HVDGWLKVIVDDDGPGMPENRREDVFKPFVRLDEARTQDSGGTGGLGLAIARDIARSHGG 427 Query: 442 DIMLSESPMGGLRAVVRVP 460 DI L +SP+GGLRA + +P Sbjct: 428 DIALEDSPLGGLRATIHIP 446 >AGc4011 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 459 Score = 469 bits (1208), Expect = e-132, Method: Compositional matrix adjust. Identities = 244/461 (52%), Positives = 326/461 (70%), Gaps = 4/461 (0%) Query: 1 MSTLDSGLTLIKNASQRVSKANGWMGNAFKSWMPTGLYARALLIMIVPMVILQTVVAFVF 60 M++LD T K+ V+KA G + W+PTGLY R+LLI+I+PM++LQ VVA VF Sbjct: 1 MASLDFFDTFKKSP---VAKAWRSAGRWLRHWLPTGLYTRSLLIIILPMILLQAVVAAVF 57 Query: 61 MERHWNTVTRRLSAAVVSDIAALIDVYKSYPQDKDRAQLRRIA-QKLQLVVDFLPAGDMP 119 MERHW VT RLSAAV DI+A+I++ ++ P++ D ++ RIA +KL L V P D+P Sbjct: 58 MERHWQLVTERLSAAVTRDISAVIELLQTDPEEDDYQRVIRIAREKLDLSVYIEPKTDLP 117 Query: 120 PPGPKPFFSLLDQTLSVQLGRQISRPFWIDTVGKSNLVEIRVQLDDSVMRIFAQRSAAYA 179 P P+P FS+LD+ L+ QL +QI RPFWIDT G +LVEIRVQL+D +R+F RS+AYA Sbjct: 118 APKPEPLFSILDRILADQLKQQIGRPFWIDTYGNGSLVEIRVQLEDKTLRVFTSRSSAYA 177 Query: 180 SNSEIFIFWMLGTSTILLIVAVLFLRNQIKPILRLADAAESFGKGREAPNFRPRGAREVR 239 SN+ IF+ WM+G S +L+ +++LFLR QIKPI LA AAE+FGKG++ + PRGA EVR Sbjct: 178 SNTHIFLVWMVGASLVLIAISILFLRGQIKPIEALAKAAENFGKGQKISGYSPRGADEVR 237 Query: 240 RAAQAFIEMKARVERSIEQRTAMLAGVSHDLRTILTRFKLELALIGEGPEIDAMRKDVDE 299 RA AFI M+ R+ER +EQRTAML GVSHDLRTILTRFKL+LAL G+ P+++ + KDVD+ Sbjct: 238 RAGLAFILMRERIERQMEQRTAMLNGVSHDLRTILTRFKLQLALAGDNPDLEGLDKDVDD 297 Query: 300 MSMMLEDYLAFARGDSGEVAQPTDMALALEELRSDAERHGHTATVAFHGLPVVTVKPASF 359 M MLE YL FAR + E ++ LE++ D E HG + + + + +P + Sbjct: 298 MQSMLEAYLTFARTEVEEDVGTLELPALLEKIGHDFELHGKKFSYQLYNIERIIARPNAL 357 Query: 360 KRCLANLVSNAARHANTISITGHRDHRYLNVTVDDDGPGIPADMREEVFKPFLRLDDARN 419 R +ANL NA R+A+ + + + R + +T DDDGPGIP RE+VFKPF RLD+ARN Sbjct: 358 SRLVANLAENARRYASNLHVDIRKAPRSIIMTFDDDGPGIPEISREDVFKPFFRLDEARN 417 Query: 420 QDEGGTGLGLAIARDIARSHGGDIMLSESPMGGLRAVVRVP 460 + GTGLGL+I RDIARSHGGD+ L ESPMGGLR +V++P Sbjct: 418 LNASGTGLGLSIVRDIARSHGGDVSLDESPMGGLRVIVKIP 458 >CC2932 [T] COG0642 Signal transduction histidine kinase Ccr Caulobacter vibrioides Length = 445 Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/438 (46%), Positives = 286/438 (65%), Gaps = 9/438 (2%) Query: 28 AFKSWMPTGLYARALLIMIVPMVILQTVVAFVFMERHWNTVTRRLSAAVVSDIAALIDVY 87 A K +PT L+ R+LLI+I+P+ I+Q V + F + HW +VT +LS + DIA + Sbjct: 11 ALKRLLPTTLFGRSLLIIILPVAIMQIAVTWAFFDAHWQSVTSKLSEGLAGDIAWAV--- 67 Query: 88 KSYPQDKDRAQLRRIAQK----LQLVVDFLPAGDMPPPGPKPFFSLLDQTLSVQLGRQIS 143 +SY D A + ++A++ L L + F +P F+ LD++L L ++ Sbjct: 68 QSYEDDPSPAAVEKLAERAEGALSLSIAFQKGRKLPTSHRPSLFAALDRSLDKALEDRLD 127 Query: 144 RPFWIDTVGKSNLVEIRVQLDDSVMRIFAQRSAAYASNSEIFIFWMLGTSTILLIVAVLF 203 PFW DT ++IRVQ+D V++I+A R AYA+ IFI WM+ + +L VA+LF Sbjct: 128 NPFWFDTTRYRAYIDIRVQVDGGVLQIYALRDRAYATQGHIFILWMVVATLLLTAVAILF 187 Query: 204 LRNQIKPILRLADAAESFGKGREAPNFRPRGAREVRRAAQAFIEMKARVERSIEQRTAML 263 +RNQ++ I RLA+AA++FG+G E P F+P GAREVR+AA AFI MK R++R IEQRTA+L Sbjct: 188 IRNQVRAIERLAEAADAFGRG-EDPEFKPHGAREVRQAALAFIAMKLRIQRHIEQRTALL 246 Query: 264 AGVSHDLRTILTRFKLELALIGEGPEIDAMRKDVDEMSMMLEDYLAFARGDSGEVAQPTD 323 A VSHDLRT LTR KLE+A+ ++AM+ D+ EM M+++YLAFARG+ GE Q D Sbjct: 247 ASVSHDLRTPLTRLKLEMAMAEPCERMEAMKGDLAEMEHMIDEYLAFARGEGGEAIQVVD 306 Query: 324 MALALEELRSDAERHGHTATVAFHGLPVVTVKPASFKRCLANLVSNAARHANTISIT-GH 382 ++ +E + +DAER G ++P +F+R LANL+ N HA+ + +T Sbjct: 307 LSDLVESVVADAERGGAAIETEITQGLETRLRPLTFRRALANLIDNGVAHADRVRVTVSP 366 Query: 383 RDHRYLNVTVDDDGPGIPADMREEVFKPFLRLDDARNQDEGGTGLGLAIARDIARSHGGD 442 R ++V VDDDGPGIP D EE FKPF RLD++RNQ+E G GLGLAIARD+AR GGD Sbjct: 367 RQTGGVDVAVDDDGPGIPEDKYEEAFKPFSRLDESRNQNEKGVGLGLAIARDMARGLGGD 426 Query: 443 IMLSESPMGGLRAVVRVP 460 ++LS S +GGLRA++R+P Sbjct: 427 LVLSRSALGGLRALIRLP 444