BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0027.p         (76 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC1214 [J] COG1186 Protein chain release factor B Ccr Caulobacte...    82   4e-16
PA0868 [J] COG1186 Protein chain release factor B Pae Pseudomona...    81   5e-16
AGc57 [J] COG1186 Protein chain release factor B Atu Agrobacteri...    74   1e-13
alr4696 [J] COG1186 Protein chain release factor B Nos Nostoc sp...    73   2e-13
YPO1066 [J] COG1186 Protein chain release factor B Ype Yersinia ...    70   2e-12

>CC1214 [J] COG1186 Protein chain release factor B Ccr Caulobacter
           vibrioides
          Length = 143

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 56/76 (73%)

Query: 1   MTKDGVIVIHAFRFRTQERNRADAIERLLEMLREAMVRPTPRRPTKPTLGSKQRRLEGKK 60
           MT+DGV+V+ A   R+QE NR DA++RL++++R A  +P PR+ TKPT  SK +RLE K 
Sbjct: 68  MTQDGVLVLFAQGSRSQEMNRQDALDRLIDLIRRATEKPKPRKATKPTYSSKLKRLETKS 127

Query: 61  RRSDIKAGRGTRRFDD 76
           +R  +K+GRG  +FDD
Sbjct: 128 KRGTVKSGRGRVKFDD 143


>PA0868 [J] COG1186 Protein chain release factor B Pae Pseudomonas
           aeruginosa
          Length = 137

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 54/74 (72%)

Query: 1   MTKDGVIVIHAFRFRTQERNRADAIERLLEMLREAMVRPTPRRPTKPTLGSKQRRLEGKK 60
           ++ DGV+VI A ++RTQE+NR DA+ERL E++R        RRPTKPT GS++RRL+GK 
Sbjct: 64  ISGDGVVVIKAQQYRTQEQNREDALERLAELIRSVAKVQKARRPTKPTRGSQKRRLDGKA 123

Query: 61  RRSDIKAGRGTRRF 74
           +R  +KAGRG   F
Sbjct: 124 KRGAVKAGRGKVDF 137


>AGc57 [J] COG1186 Protein chain release factor B Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 156

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 1   MTKDGVIVIHAFRFRTQERNRADAIERLLEMLREAMVRPTP-RRPTKPTLGSKQRRLEGK 59
           ++K+GV++I A RFR+QERNR DA ERL E++ EA   P P R+ TKPT GS +RRL+ K
Sbjct: 81  VSKEGVLMIEASRFRSQERNREDARERLKELILEAAAPPPPVRKATKPTKGSVERRLKAK 140

Query: 60  KRRSDIKAGRG 70
             RSDIK  RG
Sbjct: 141 SGRSDIKKMRG 151


>alr4696 [J] COG1186 Protein chain release factor B Nos Nostoc sp. PCC 7120
          Length = 137

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 55/69 (79%)

Query: 1   MTKDGVIVIHAFRFRTQERNRADAIERLLEMLREAMVRPTPRRPTKPTLGSKQRRLEGKK 60
           + ++GV+VI A   R+QE+N+ +A++RL E+++ A++ P PR+PTKPT GS++RRL+ K 
Sbjct: 64  INQEGVVVIKAQEHRSQEQNKEEALQRLKELIKGAVILPQPRKPTKPTRGSQKRRLDSKT 123

Query: 61  RRSDIKAGR 69
           +R++IK+ R
Sbjct: 124 KRAEIKSMR 132


>YPO1066 [J] COG1186 Protein chain release factor B Ype Yersinia pestis
          Length = 138

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 49/70 (70%)

Query: 1   MTKDGVIVIHAFRFRTQERNRADAIERLLEMLREAMVRPTPRRPTKPTLGSKQRRLEGKK 60
           +T +GV++I A  +R+Q+ NR  A+ RL+ ++R+AMV    RR TKPT GSK RR+EGK 
Sbjct: 64  VTAEGVVIIKAQEYRSQDMNREAALARLVALIRQAMVVEKARRATKPTKGSKIRRVEGKV 123

Query: 61  RRSDIKAGRG 70
           R+   KA RG
Sbjct: 124 RKGATKALRG 133