BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0008.p         (91 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA545 [R] COG3668 Plasmid stabilization system protein Atu Agr...    85   4e-17
PA4877 [R] COG3668 Plasmid stabilization system protein Pae Pseu...    73   1e-13

>AGpA545 [R] COG3668 Plasmid stabilization system protein Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 97

 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 67/90 (74%), Gaps = 9/90 (10%)

Query: 1  MPRGDKSSYTDKQKRQAEHIEEGYEQRGISSREAERRAWATVNKETHGGKKSGSGRGTRE 60
          MPRGDKS+YTDKQKR+AEHIEEGYE RG+S REAERRAWATVNKE+ GGKKSGSGRG  E
Sbjct: 1  MPRGDKSAYTDKQKRKAEHIEEGYEDRGVSEREAERRAWATVNKESGGGKKSGSGRGHAE 60

Query: 61 DHSPS---------RKGGRPAAERSRSAKK 81
          +H+ S             R  AERS S KK
Sbjct: 61 NHASSEKGGRKGGAAAASRTKAERSASEKK 90


>PA4877 [R] COG3668 Plasmid stabilization system protein Pae Pseudomonas
          aeruginosa
          Length = 135

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 39/45 (86%)

Query: 1  MPRGDKSSYTDKQKRQAEHIEEGYEQRGISSREAERRAWATVNKE 45
          MPRGDKS Y+DKQ+R+AEHIEE Y+ +G+S  EAE RAWATVNK+
Sbjct: 1  MPRGDKSKYSDKQQRKAEHIEESYKAKGVSESEAEARAWATVNKQ 45