BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0014.p         (191 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll1598 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...    97   3e-20
SMa1299 [K] COG1309 Transcriptional regulator Sme Sinorhizobium ...    81   1e-15
SMb20455 [K] COG1309 Transcriptional regulator Sme Sinorhizobium...    81   1e-15
ZycfQ [K] COG1309 Transcriptional regulator EcZ Escherichia coli...    78   1e-14
ECs1489 [K] COG1309 Transcriptional regulator Ecs Escherichia co...    78   1e-14

>mll1598 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 209

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 2/166 (1%)

Query: 3   RPRSFDPDDVLEIARQMFWQKGFQATSLDEITAASGVAKPSLYAAFGDKNALFLKVLDRY 62
           RPR+FDPD  L+ A  +FW+ G++ATSL  +  A G+  P +Y AF DK  LF K L RY
Sbjct: 11  RPRAFDPDRALDAAMHLFWEHGYEATSLAMLREAMGLTPPQIYNAFTDKETLFRKALTRY 70

Query: 63  HDGILGWAERVLAQPGPARDVIRQWLTGFIPYCSGEKGQRGCLSINSATDGSLDQVELRK 122
           H+  +G+A   L+ P P  + IR+ L G     S      GCL ++ A   S     +  
Sbjct: 71  HETEIGFALDALSAPVPTPEAIRRLLLGAAEAYSRPGKPGGCLFVSGALAASPRAQAIAD 130

Query: 123 SIERYNRRLEELLRTRLRTDRA--QFSKGFDPDVTAHTIMVVHAGL 166
            ++ Y +  E  +  RL   +A     +GF  +  A  I  V  G+
Sbjct: 131 ELKAYRKASEAAIAERLAMGQAAGDLPEGFSVESFAKYIAGVMNGM 176


>SMa1299 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 203

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 2/158 (1%)

Query: 1   MARPRSFDPDDVLEIARQMFWQKGFQATSLDEITAASGVAKPSLYAAFGDKNALFLKVLD 60
           + RPR FD +  L+ A ++F +KG+  TS+ E+    G+   S+Y AF DK  +F+   D
Sbjct: 11  VGRPREFDINQALDAAIRIFSEKGYHGTSIAELKTEMGLTAGSIYKAFRDKRDVFVAAYD 70

Query: 61  RYHDGILGWAERVLAQPGPARDVIRQWLTGFIPYCSGEKGQRGCLSINSATDGSLDQVEL 120
           RY        ++ L      R+ I + +  +     GE G+RGCL+I +A +  L   E+
Sbjct: 71  RYKQIRADLLDQALFSASTGREKIARVVGFYAMSACGETGRRGCLAIGAAVELVLSDAEI 130

Query: 121 RKSIERYNRRLEELLRTRLRTDR--AQFSKGFDPDVTA 156
              + R+NR+L   L   +R  +      +  DP  TA
Sbjct: 131 ADRVGRHNRKLVARLEGFIRDGQLDGSIRQDVDPAATA 168


>SMb20455 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 204

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 14/194 (7%)

Query: 3   RPRSFDPDDVLEIARQMFWQKGFQATSLDEITAASGVAKPSLYAAFGDKNALFLKVLDRY 62
           RPRSFD  D L  A ++FW+KG++  SL  +TAA G+  PSLYAAFG K AL+L+ ++ Y
Sbjct: 6   RPRSFDRADALMRAMKVFWEKGYEGASLTALTAAMGINAPSLYAAFGCKEALYLEAMELY 65

Query: 63  HD--GILGWAERVLAQPGPARDVIRQWLTGFIPYCSGEKGQRGCLSINSATDGSLDQVEL 120
               G   WA   L     AR+ + Q L       S      GCL       G L Q  +
Sbjct: 66  AQTVGTEIWA--ALETAPTAREAVSQILLATAEAYSQPDTPHGCL----IALGGLHQAAI 119

Query: 121 RKSI----ERYNRRLEELLRTRLRTDRA--QFSKGFDPDVTAHTIMVVHAGLLALAHQRP 174
            +++     R+ +   + LR RL    A  +     D    A     V  G+  LA    
Sbjct: 120 PEAVCEALTRHRKENIDKLRQRLEAAIAGGELPDRVDAGAVATFYATVQHGMSILARDGG 179

Query: 175 DWKQVKAVIDQVMS 188
            ++ +K V D  M+
Sbjct: 180 SYEALKNVTDGAMA 193


>ZycfQ [K] COG1309 Transcriptional regulator EcZ Escherichia coli O157:H7
           EDL933
          Length = 236

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 1/154 (0%)

Query: 3   RPRSFDPDDVLEIARQMFWQKGFQATSLDEITAASGVAKPSLYAAFGDKNALFLKVLDRY 62
           RP+ FD D  L+ A ++FWQ G++ATSL ++  A+G   P+LYA F +K  LF  VLDRY
Sbjct: 41  RPKVFDRDAALDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGLFRAVLDRY 100

Query: 63  HDGILGWAE-RVLAQPGPARDVIRQWLTGFIPYCSGEKGQRGCLSINSATDGSLDQVELR 121
            D      E ++  +       +  +        +G+    GC  IN+ T  S D  ++ 
Sbjct: 101 IDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTGKDTPAGCFMINNCTTLSPDSGDIA 160

Query: 122 KSIERYNRRLEELLRTRLRTDRAQFSKGFDPDVT 155
            +++  +   E  L+  L   +A+       DVT
Sbjct: 161 NTLKSRHAMQERTLQQFLCQRQARGEIPTHCDVT 194


>ECs1489 [K] COG1309 Transcriptional regulator Ecs Escherichia coli O157:H7
          Length = 236

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 1/154 (0%)

Query: 3   RPRSFDPDDVLEIARQMFWQKGFQATSLDEITAASGVAKPSLYAAFGDKNALFLKVLDRY 62
           RP+ FD D  L+ A ++FWQ G++ATSL ++  A+G   P+LYA F +K  LF  VLDRY
Sbjct: 41  RPKVFDRDAALDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGLFRAVLDRY 100

Query: 63  HDGILGWAE-RVLAQPGPARDVIRQWLTGFIPYCSGEKGQRGCLSINSATDGSLDQVELR 121
            D      E ++  +       +  +        +G+    GC  IN+ T  S D  ++ 
Sbjct: 101 IDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTGKDTPAGCFMINNCTTLSPDSGDIA 160

Query: 122 KSIERYNRRLEELLRTRLRTDRAQFSKGFDPDVT 155
            +++  +   E  L+  L   +A+       DVT
Sbjct: 161 NTLKSRHAMQERTLQQFLCQRQARGEIPTHCDVT 194