BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0181.p (349 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5231_2 [V] COG0842 ABC-type multidrug transport system, permea... 369 e-102 STM3586_2 [V] COG0842 ABC-type multidrug transport system, perme... 367 e-101 yhiH_2 [V] COG0842 ABC-type multidrug transport system, permease... 366 e-101 ZyhiH_2 [V] COG0842 ABC-type multidrug transport system, permeas... 363 e-100 ECs4359_2 [V] COG0842 ABC-type multidrug transport system, perme... 362 e-100 >PA5231_2 [V] COG0842 ABC-type multidrug transport system, permease component Pae Pseudomonas aeruginosa Length = 369 Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/338 (54%), Positives = 247/338 (73%) Query: 11 MIVFGFGISTDVNNLTFAALDRDQTPESRAYLEELRGSPYFVEKPPIADYADIDRRLKNG 70 M + G+GI+ DV +L++A LDRDQT S+AY + GS YFVE PI D D+DRRL++G Sbjct: 31 MFIIGYGINMDVEDLSWAVLDRDQTTTSQAYALNIAGSRYFVEHAPITDPDDLDRRLRSG 90 Query: 71 DINASIEIPPNFGVDLKRGRPVWVSAWIDGAMPFRAQTIRGYLEGMHQLYLSDPSVKTTQ 130 +++ ++EIPPNFG DLKRG + WIDGAMP RA T+ GY++G+H YL+D S + Sbjct: 91 ELSLAVEIPPNFGRDLKRGSDPAIGVWIDGAMPTRANTVLGYVQGLHTSYLADLSRQAGG 150 Query: 131 PTAPLPADIEIRFKYNQDFDSVFAMVPSTLAMMLALFPAILMALAVVREKELGSITNLYV 190 A A E+R++YN D +S+ AMVP+ + ++L + PA+L AL VVREKELGSITNLYV Sbjct: 151 AEASAAASTEVRYRYNPDVESLKAMVPAVIPLLLIMIPAMLTALGVVREKELGSITNLYV 210 Query: 191 TPVTRFEFLVGKQLPYVAVALVNFLVMFVMAIFLFDVPLKGSFPALLVGTVIYVFTTTGY 250 TPVTR EFLVGKQLPYVA+ ++NFL+M V+AI +F VPLKGSF AL +G +YV T+TG Sbjct: 211 TPVTRLEFLVGKQLPYVAMGMINFLLMLVLAIVVFRVPLKGSFLALTIGAFLYVVTSTGL 270 Query: 251 GMLISTFCKTQIAALFGTAILTILPAQQFSGMMTPVSSLSGTAQIIGLGFPMSYYRPISV 310 G+ +STF ++QIAA+FG AI T++PA QFSG++ PVSSL G A IG +P S++ +S Sbjct: 271 GLFLSTFMRSQIAAVFGVAIATMIPAIQFSGLIHPVSSLEGAAAWIGKLYPTSHFLVVSR 330 Query: 311 GTFTKGLGFADLGSSILLLTLFIPVLTIISMLLLRKQE 348 G F+K LG +DL + L L I VLT++S+ L+KQE Sbjct: 331 GAFSKSLGLSDLWAYYLPLAASIVVLTLLSVACLKKQE 368 >STM3586_2 [V] COG0842 ABC-type multidrug transport system, permease component Sty Salmonella typhimurium LT2 Length = 362 Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/348 (50%), Positives = 256/348 (73%), Gaps = 1/348 (0%) Query: 2 FALFGTAMLMIVFGFGISTDVNNLTFAALDRDQTPESRAYLEELRGSPYFVEKPPIADYA 61 AL GT +LM++ G+GIS DV NL FA LDRDQT S+A+ L GS YF+E+PP+A Y Sbjct: 14 LALLGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWSLNLAGSRYFIEQPPLASYD 73 Query: 62 DIDRRLKNGDINASIEIPPNFGVDLKRGRPVWVSAWIDGAMPFRAQTIRGYLEGMHQLYL 121 ++DRR+++G++ +IEIPPNFG D+ RG P + W+DGAMP RA+T++GY++ MHQ +L Sbjct: 74 ELDRRMRSGELAVAIEIPPNFGRDIARGTPAQIGVWVDGAMPSRAETVKGYVQAMHQSWL 133 Query: 122 SDPSVKTTQPTAPLPA-DIEIRFKYNQDFDSVFAMVPSTLAMMLALFPAILMALAVVREK 180 + + + P + +IE R++YN D S+ A+VP+ + ++L + P++L AL+VVREK Sbjct: 134 QEAASRQPNPVKQVGLLNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSALSVVREK 193 Query: 181 ELGSITNLYVTPVTRFEFLVGKQLPYVAVALVNFLVMFVMAIFLFDVPLKGSFPALLVGT 240 ELGS+ NLYVTP TR EFL+GKQLPY+A+ ++NFL++ +++F+F VPLKGSF L + Sbjct: 194 ELGSMINLYVTPTTRSEFLLGKQLPYIALGMLNFLLLCALSVFVFGVPLKGSFLTLTLAA 253 Query: 241 VIYVFTTTGYGMLISTFCKTQIAALFGTAILTILPAQQFSGMMTPVSSLSGTAQIIGLGF 300 ++YV TG G+LISTF K+QIAA+FGT+I+T++PA QFSGM+ PV+SL G + IG + Sbjct: 254 LLYVIIATGLGLLISTFMKSQIAAIFGTSIITLIPATQFSGMIDPVASLEGPGRWIGEIY 313 Query: 301 PMSYYRPISVGTFTKGLGFADLGSSILLLTLFIPVLTIISMLLLRKQE 348 P S++ I+ GTF+K L +DL + L + +PV+ +S+LLL+KQE Sbjct: 314 PTSHFLTIARGTFSKALDLSDLWPLFMPLLIAVPVVMGLSILLLKKQE 361 >yhiH_2 [V] COG0842 ABC-type multidrug transport system, permease component Eco Escherichia coli K12 Length = 362 Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/348 (51%), Positives = 253/348 (72%), Gaps = 1/348 (0%) Query: 2 FALFGTAMLMIVFGFGISTDVNNLTFAALDRDQTPESRAYLEELRGSPYFVEKPPIADYA 61 AL GT +LM++ G+GIS DV NL FA LDRDQT S+A+ L GS YF+E+PP+ Y Sbjct: 14 LALMGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPPLTSYD 73 Query: 62 DIDRRLKNGDINASIEIPPNFGVDLKRGRPVWVSAWIDGAMPFRAQTIRGYLEGMHQLYL 121 ++DRR++ GDI +IEIPPNFG D+ RG PV + WIDGAMP RA+T++GY++ MHQ +L Sbjct: 74 ELDRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMHQSWL 133 Query: 122 SDPSVKTTQPTAPLP-ADIEIRFKYNQDFDSVFAMVPSTLAMMLALFPAILMALAVVREK 180 D + + + P + +IE R++YN D S+ A+VP+ + ++L + P++L AL+VVREK Sbjct: 134 QDVASRQSTPASQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSALSVVREK 193 Query: 181 ELGSITNLYVTPVTRFEFLVGKQLPYVAVALVNFLVMFVMAIFLFDVPLKGSFPALLVGT 240 ELGSI NLYVTP TR EFL+GKQLPY+A+ ++NF ++ +++F+F VP KGSF L + Sbjct: 194 ELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFLTLTLAA 253 Query: 241 VIYVFTTTGYGMLISTFCKTQIAALFGTAILTILPAQQFSGMMTPVSSLSGTAQIIGLGF 300 ++Y+ TG G+LISTF K+QIAA+FGTAI+T++PA QFSGM+ PV+SL G + IG + Sbjct: 254 LLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGRWIGEVY 313 Query: 301 PMSYYRPISVGTFTKGLGFADLGSSILLLTLFIPVLTIISMLLLRKQE 348 P S++ I+ GTF+K L DL + L + IP++ +S+LLL+KQE Sbjct: 314 PTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMGLSILLLKKQE 361 >ZyhiH_2 [V] COG0842 ABC-type multidrug transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 362 Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/348 (50%), Positives = 253/348 (72%), Gaps = 1/348 (0%) Query: 2 FALFGTAMLMIVFGFGISTDVNNLTFAALDRDQTPESRAYLEELRGSPYFVEKPPIADYA 61 AL GT +LM++ G+GIS DV NL FA LDRDQT S+A+ L GS YF+E+P + Y Sbjct: 14 LALMGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPLLTSYD 73 Query: 62 DIDRRLKNGDINASIEIPPNFGVDLKRGRPVWVSAWIDGAMPFRAQTIRGYLEGMHQLYL 121 ++DRR++ GDI +IEIPPNFG D+ RG PV + WIDGAMP RA+T++GY++ MHQ +L Sbjct: 74 ELDRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMHQSWL 133 Query: 122 SDPSVKTTQPTAPLP-ADIEIRFKYNQDFDSVFAMVPSTLAMMLALFPAILMALAVVREK 180 D + + + P++ +IE R++YN D S+ A+VP+ + ++L + P++L AL+VVREK Sbjct: 134 QDVASRQSTPSSQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSALSVVREK 193 Query: 181 ELGSITNLYVTPVTRFEFLVGKQLPYVAVALVNFLVMFVMAIFLFDVPLKGSFPALLVGT 240 ELGSI NLYVTP TR EFL+GKQLPY+A+ ++NF ++ +++F+F VP KGSF L + Sbjct: 194 ELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFLTLTLAA 253 Query: 241 VIYVFTTTGYGMLISTFCKTQIAALFGTAILTILPAQQFSGMMTPVSSLSGTAQIIGLGF 300 ++Y+ TG G+LISTF K+QIAA+FGTAI+T++PA QFSGM+ PV+SL G + IG + Sbjct: 254 LLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGRWIGEVY 313 Query: 301 PMSYYRPISVGTFTKGLGFADLGSSILLLTLFIPVLTIISMLLLRKQE 348 P S++ I+ GTF+K L DL + L + IP++ +S+LLL+KQE Sbjct: 314 PTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMGLSILLLKKQE 361 >ECs4359_2 [V] COG0842 ABC-type multidrug transport system, permease component Ecs Escherichia coli O157:H7 Length = 378 Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/348 (50%), Positives = 253/348 (72%), Gaps = 1/348 (0%) Query: 2 FALFGTAMLMIVFGFGISTDVNNLTFAALDRDQTPESRAYLEELRGSPYFVEKPPIADYA 61 AL GT +LM++ G+GIS DV NL FA LDRDQT S+A+ L GS YF+E+P + Y Sbjct: 30 LALMGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPLLTSYD 89 Query: 62 DIDRRLKNGDINASIEIPPNFGVDLKRGRPVWVSAWIDGAMPFRAQTIRGYLEGMHQLYL 121 ++DRR++ GDI +IEIPPNFG D+ RG PV + WIDGAMP RA+T++GY++ MHQ +L Sbjct: 90 ELDRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMHQSWL 149 Query: 122 SDPSVKTTQPTAPLP-ADIEIRFKYNQDFDSVFAMVPSTLAMMLALFPAILMALAVVREK 180 D + + + P++ +IE R++YN D S+ A+VP+ + ++L + P++L AL+VVREK Sbjct: 150 QDVASRQSTPSSQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSALSVVREK 209 Query: 181 ELGSITNLYVTPVTRFEFLVGKQLPYVAVALVNFLVMFVMAIFLFDVPLKGSFPALLVGT 240 ELGSI NLYVTP TR EFL+GKQLPY+A+ ++NF ++ +++F+F VP KGSF L + Sbjct: 210 ELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFLTLTLAA 269 Query: 241 VIYVFTTTGYGMLISTFCKTQIAALFGTAILTILPAQQFSGMMTPVSSLSGTAQIIGLGF 300 ++Y+ TG G+LISTF K+QIAA+FGTAI+T++PA QFSGM+ PV+SL G + IG + Sbjct: 270 LLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGRWIGEVY 329 Query: 301 PMSYYRPISVGTFTKGLGFADLGSSILLLTLFIPVLTIISMLLLRKQE 348 P S++ I+ GTF+K L DL + L + IP++ +S+LLL+KQE Sbjct: 330 PTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMGLSILLLKKQE 377