BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0150.p (273 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA346 [KG] COG1349 Transcriptional regulators of sugar metabol... 221 1e-57 mll3414 Non COG 178 9e-45 PA1490 [KG] COG1349 Transcriptional regulators of sugar metaboli... 118 1e-26 NMA1749 [KG] COG1349 Transcriptional regulators of sugar metabol... 114 2e-25 NMB1561 [KG] COG1349 Transcriptional regulators of sugar metabol... 114 3e-25 >AGpA346 [KG] COG1349 Transcriptional regulators of sugar metabolism Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 111/260 (42%), Positives = 164/260 (63%) Query: 12 RPRKADGDRLSKLARHKHIISQLTAAPTLRASELAAVLGVSGETIRRDLMELQEQKLINR 71 +P + + K R + I+++L AP+LR +ELA L VS ETIRRDL E+ EQ L+NR Sbjct: 9 KPGEPGAMKKPKSVRQERILTELNQAPSLRVAELARRLDVSTETIRRDLDEMTEQGLLNR 68 Query: 72 TYGGASRPFALEPALTDRKAIMIAEREAMAAVIADLILPNEVLMLGAGATTFHIARRLAS 131 TYGGA R + EP++T+R + + ERE +A ++ +VLM+G+G+TT H ARR+A Sbjct: 69 TYGGAVRSLSTEPSVTERHTLFVGERERIAKAAVQILKGAQVLMIGSGSTTVHTARRIAV 128 Query: 132 RAHDITVITHDYAIAAALAVNPSIRVLCCPGRYHPNEGYVFGTQTIANINSYEANRAIVS 191 +ITV+TH + +A LA+NP+I+V+ PG YH EG G ++ +NS+ A+ I+ Sbjct: 129 EMKNITVLTHSFGVATVLAINPTIKVVMLPGDYHATEGATVGAHAVSFLNSFYADFTILG 188 Query: 192 ATGISARGANDADDEAGAIYGAMAKRAAEAILVADHSKFDQRALTVFAHWTDIDRLVTDR 251 A+G+ G +DA E GA+Y AM RAA I+VADHSK D+ +A W DI +VTD+ Sbjct: 189 ASGLGPDGPSDALLECGAVYSAMVSRAARTIVVADHSKHDRLFPARYAPWRDIAHVVTDK 248 Query: 252 QPEGALATALRAAGTEIIVA 271 P L +L ++G ++ V Sbjct: 249 APGEDLTESLDSSGVKLTVC 268 >mll3414 Non COG Length = 260 Score = 178 bits (452), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 99/254 (38%), Positives = 146/254 (57%), Gaps = 1/254 (0%) Query: 20 RLSKLARHKHIISQLTAAPTLRASELAAVLGVSGETIRRDLMELQEQKLINRTYGGASRP 79 RLSK RH+ I+S++ + ++R S LA LGV+GETIRRDL+EL + L+NRTYGGA+ Sbjct: 5 RLSKKERHELILSEVRRSASIRVSRLALRLGVAGETIRRDLVELGDAGLLNRTYGGATIS 64 Query: 80 FAL-EPALTDRKAIMIAEREAMAAVIADLILPNEVLMLGAGATTFHIARRLASRAHDITV 138 EP + +R MI ER + A L+ ++M+ G+TT+ +AR L+ ++T+ Sbjct: 65 LVTSEPVIAERSQTMIEERARIGRGAAGLVEKGHIVMIDGGSTTYEVARGLSQLKRELTI 124 Query: 139 ITHDYAIAAALAVNPSIRVLCCPGRYHPNEGYVFGTQTIANINSYEANRAIVSATGISAR 198 IT+ +A+ NPS RV+ CPG Y E V G T+ + Y A+ AI+ A+ +SA Sbjct: 125 ITNSIGVASVAGANPSFRVILCPGTYDSREASVVGEDTVEFVRRYNADIAIIGASSLSAD 184 Query: 199 GANDADDEAGAIYGAMAKRAAEAILVADHSKFDQRALTVFAHWTDIDRLVTDRQPEGALA 258 G +D A A+ AM RA LV + KF + +L + +VTDR+P+ AL Sbjct: 185 GPSDTISGAAAVKRAMISRALSTALVVTNDKFGRNSLERICTLGALSDIVTDREPQPALR 244 Query: 259 TALRAAGTEIIVAQ 272 + AAGTE+ V Sbjct: 245 AVIEAAGTELHVCS 258 >PA1490 [KG] COG1349 Transcriptional regulators of sugar metabolism Pae Pseudomonas aeruginosa Length = 258 Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 122/245 (49%), Gaps = 4/245 (1%) Query: 26 RHKHIISQLTAAPTLRASELAAVLGVSGETIRRDLMELQEQKLINRTYGGASRPFA--LE 83 R +HI+ L + ELA L S ETIRRDL L EQ L+++ +GGA+ P + E Sbjct: 6 RRRHILELLRQRERISVDELARTLSTSQETIRRDLAALAEQGLVSKFHGGAALPPSGEHE 65 Query: 84 PALTDRKAIMIAEREAMAAVIADLILPNEVLMLGAGATTFHIARRLASRAHDITVITHDY 143 A R E+ A+A A L P + + + G TT AR LA ++H +TVIT+ Sbjct: 66 NAFQTRMNEHAQEKRAVARYAAGLFGPGDSIFIDTGTTTLLFARELARQSH-LTVITNSL 124 Query: 144 AIAAALAVNPSIRVLCCPGRYHPNEGYVFGTQTIANINSYEANRAIVSATGISARGANDA 203 IA ++ + + R G Y P G I I + A A+++ ++ GA D Sbjct: 125 LIAGSVGASGN-RAFMIGGEYRPESEQNVGALAIEQIARFNAEHAVITVGALNGDGAMDF 183 Query: 204 DDEAGAIYGAMAKRAAEAILVADHSKFDQRALTVFAHWTDIDRLVTDRQPEGALATALRA 263 E I AM +A + ++AD SK +RAL + I+RLV DR+P G L AL+ Sbjct: 184 SIEEAEIARAMIAQARQLTVIADSSKLGRRALFQVFPLSRINRLVVDRKPTGELWEALQQ 243 Query: 264 AGTEI 268 A E+ Sbjct: 244 ARVEV 248 >NMA1749 [KG] COG1349 Transcriptional regulators of sugar metabolism NmA Neisseria meningitidis Z2491 Length = 257 Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 126/251 (50%), Gaps = 2/251 (0%) Query: 23 KLARHKHIISQLTAAPTLRASELAAVLGVSGETIRRDLMELQEQKLINRTYGGASRPFAL 82 K+ RH I+S + + ELAA L V+ +TIRRD+ EL++ + R +GGAS L Sbjct: 4 KIQRHGEILSLVRRHQFMSVDELAAALDVTPQTIRRDIRELEDAGSLKRHHGGASSGGNL 63 Query: 83 EPALTDRKAIMIA-EREAMAAVIADLILPNEVLMLGAGATTFHIARRLASRAHDITVITH 141 L + I E+ A+A +IA+ I L + G T +A L R + +IT+ Sbjct: 64 PEGLPASRQIQCQNEKNAIARLIAEHIPDESSLFVSIGTTMEAVASELVRRRGSLRIITN 123 Query: 142 DYAIAAALAVNPSIRVLCCPGRYHPNEGYVFGTQTIANINSYEANRAIVSATGISARGA- 200 + +A+ ++ V+ G P +G + G T+ IN ++ + A++S G+ + G+ Sbjct: 124 NIHVASIVSARTDYTVIITSGVVRPLDGGITGVATVDFINQFKVDYAVMSTHGVESDGSL 183 Query: 201 NDADDEAGAIYGAMAKRAAEAILVADHSKFDQRALTVFAHWTDIDRLVTDRQPEGALATA 260 D D + ++ AM A L DHSKF AL T D++ TDR P+ A+ Sbjct: 184 LDDDYKEVSVMQAMIANARVRFLGVDHSKFRSNALVRLGDITAFDKVFTDRLPDTAMQKM 243 Query: 261 LRAAGTEIIVA 271 L+ AG E ++A Sbjct: 244 LKEAGVECLIA 254 >NMB1561 [KG] COG1349 Transcriptional regulators of sugar metabolism Nme Neisseria meningitidis MC58 Length = 257 Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 124/251 (49%), Gaps = 2/251 (0%) Query: 23 KLARHKHIISQLTAAPTLRASELAAVLGVSGETIRRDLMELQEQKLINRTYGGASRPFAL 82 K+ RH I+S + + ELAA L V+ +TIRRD+ EL+E + R +GGAS L Sbjct: 4 KIQRHGEILSLVRRHQFMSVDELAAALDVTPQTIRRDIRELEEVGSLKRHHGGASSGGNL 63 Query: 83 EPAL-TDRKAIMIAEREAMAAVIADLILPNEVLMLGAGATTFHIARRLASRAHDITVITH 141 L DR+ E+ A+A +IA+ I L + G T + L R + VIT+ Sbjct: 64 PEGLPADRQTRCQNEKNAIARLIAEHIPDGSSLFVSIGTTMEAVVSELVRRRGSLRVITN 123 Query: 142 DYAIAAALAVNPSIRVLCCPGRYHPNEGYVFGTQTIANINSYEANRAIVSATGISARGA- 200 + A+ + V+ G P +G + G T+ IN ++ + A++S G+ + G+ Sbjct: 124 NIHAASIASARTDYTVIITSGVVRPLDGGITGVATVDFINQFKVDYAVMSTHGVESDGSL 183 Query: 201 NDADDEAGAIYGAMAKRAAEAILVADHSKFDQRALTVFAHWTDIDRLVTDRQPEGALATA 260 D D + ++ AM A L DHSKF AL T D++ TDR P+ A+ Sbjct: 184 LDDDYKEVSVMQAMIANARVRFLGVDHSKFRSNALVRLGDITAFDKVFTDRLPDTAMQKM 243 Query: 261 LRAAGTEIIVA 271 L+ AG E ++A Sbjct: 244 LKEAGVECLIA 254