BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0137.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1630 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer...    67   7e-12
BMEII0219 [K] COG1414 Transcriptional regulator Bme Brucella mel...    62   2e-10

>PA1630 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 288

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 48/74 (64%)

Query: 1   MAQETAGTDNRRVIQVVSRAFDIVRCFEGRSIRLGNREIADRCGLPRSTVSRLTLTLTQI 60
           M ++     +R+ +  ++R  +++RCF  R   LGN+E+A + GLP+ TVSRLT TLT++
Sbjct: 31  MQEKDEELKDRQFVTALARGLELLRCFTPRESLLGNQELAKKTGLPKPTVSRLTHTLTRL 90

Query: 61  GQLIYLPQEQKYAL 74
           G L +LP   KY L
Sbjct: 91  GYLRHLPHSGKYQL 104


>BMEII0219 [K] COG1414 Transcriptional regulator Bme Brucella melitensis
          Length = 308

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 13/120 (10%)

Query: 9   DNRRVIQVVSRAFDIVRCFEGRSIRLGNREIADRCGLPRSTVSRLTLTLTQIGQLIYLPQ 68
           D+ +V   + R  +I+R F    + LGN+E+ DR GLP++TVSR+T TL  +G L Y   
Sbjct: 51  DSAQVSSALVRGLEILRSFTPHDLSLGNQELIDRTGLPKATVSRMTATLVNLGYLDYDEM 110

Query: 69  EQKYALGPHAAAAG-------------APLFAQGCDKPVCADEQQLRQVPRFGYFEDQRN 115
             +Y +GP   A G              PL  +  +K   A    LR+     Y  + R+
Sbjct: 111 LGRYRIGPATIALGYSGLSANVVVHIAMPLMRKLAEKTGVAVAMGLREQQEMVYIANARS 170