BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0132.p (225 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02036 [K] COG1802 Transcriptional regulators Sme Sinorhizobiu... 91 2e-18 BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella me... 79 1e-14 SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 77 3e-14 Cgl2264 [K] COG1802 Transcriptional regulators Cgl Corynebacteri... 76 7e-14 PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 75 1e-13 >SMc02036 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 235 Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 103/207 (49%), Gaps = 19/207 (9%) Query: 4 NLREQVLQRVRAEIISGQSLPGTMYSVPSLAASLGVSSTPVREALLELSRGGLVEPMRNR 63 +L +Q Q++R+ I+ G+ G S +LA+ LGVS TPVREAL+ L R GL+E R Sbjct: 9 SLTDQAAQQIRSRIVRGEFQLGEPLSEIALASELGVSKTPVREALMVLKRQGLIEVHPQR 68 Query: 64 GFKVVEPTLTELRNLFDMREVLELHAAVLVAANPPKDLTIVRGWAD---QIARAVETDDV 120 G V + ++R L ++REVLEL A + A + LT R WAD ++ A++ DD Sbjct: 69 GSFVFDMDANQVRKLSELREVLELAAMRMALATDRQALT--RQWADIVKEMREALDADDA 126 Query: 121 QLYLEADRNYHREFIAAAGN-------DLLTDTVMGLRDKMRLYGISSRAGHERQQASVP 173 + Y D +H A N +L+ V LR+++ L +S Sbjct: 127 ECYRTLDGGFHMVLFELADNAYLLEAYELIAFRVQALRNRLSL-------APSLNASSFE 179 Query: 174 EHYRLIELALAGETEALTALLRTHIRS 200 +H RL EL + +A L+ HI S Sbjct: 180 DHVRLAELVAGSDDDAAIELMGRHIAS 206 >BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella melitensis Length = 238 Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 1/197 (0%) Query: 5 LREQVLQRVRAEIISGQSLPGTMYSVPSLAASLGVSSTPVREALLELSRGGLVEPMRNRG 64 L ++V + +R I +G PG + +A G+S TP+REAL L R GLV + RG Sbjct: 22 LLDEVAEALRERIYAGDYAPGAILRQEHIATEFGISRTPLREALRVLERDGLVIHLPGRG 81 Query: 65 FKVVEPTLTELRNLFDMREVLELHAAVLVAANPPK-DLTIVRGWADQIARAVETDDVQLY 123 +V LT L + + +REVL+ AA A D+ +R + V+ D + Y Sbjct: 82 VRVASADLTRLIDAYAVREVLDGVAARFAAERASDADIAKLRAHVAGQDKVVDPWDPKAY 141 Query: 124 LEADRNYHREFIAAAGNDLLTDTVMGLRDKMRLYGISSRAGHERQQASVPEHYRLIELAL 183 +++ ++H + AGN L V LR +++ S +R + ++ EH ++E Sbjct: 142 TQSNVDFHMAVMNTAGNASLIAFVPLLRMTSQVFAPSFSLSVDRARDAIREHAAIVEAIA 201 Query: 184 AGETEALTALLRTHIRS 200 A + E L R HIR+ Sbjct: 202 ARDGEEAERLARAHIRA 218 >SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 224 Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 1/199 (0%) Query: 1 MDQNLREQVLQRVRAEIISGQSLPGTMYSVPSLAASLGVSSTPVREALLELSRGGLVEPM 60 M +N+ ++ + I++G+ PG LA GVS TP+REAL++LS GLVE Sbjct: 1 MSENIFYKLRDDIENGIVTGEFEPGERLDETQLAMRFGVSRTPIREALMQLSAIGLVEIR 60 Query: 61 RNRGFKVVEPTLTELRNLFDMREVLELHAAVLVA-ANPPKDLTIVRGWADQIARAVETDD 119 RG VV+P + +F++ LE A L A + +D + ++ AV +++ Sbjct: 61 PRRGAVVVDPAPQRVYEMFEVMAELEGMAGALAARRHTEEDSAALLAAHEKCREAVLSEE 120 Query: 120 VQLYLEADRNYHREFIAAAGNDLLTDTVMGLRDKMRLYGISSRAGHERQQASVPEHYRLI 179 Y + +HR A+ + L + L ++R Y R + S EH ++ Sbjct: 121 TDRYYYENEIFHRAIYTASHSGFLEEQCTTLHRRLRPYRRLQLRVRNRMKVSFREHGEIV 180 Query: 180 ELALAGETEALTALLRTHI 198 E L+G T+ LR+H+ Sbjct: 181 EAILSGNTDGAREGLRSHV 199 >Cgl2264 [K] COG1802 Transcriptional regulators Cgl Corynebacterium glutamicum Length = 221 Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 3/189 (1%) Query: 13 VRAEIISGQSLPGTMYSVPSLAASLGVSSTPVREALLELSRGGLVEPMRNRGFKVVEPTL 72 VR + + G YSV ++ LG+S +PVR+ALL L GL+ RNRGF++VE Sbjct: 4 VRESTLDKTMVTGEWYSVYQVSDQLGISRSPVRDALLRLEEAGLIRFTRNRGFQIVETKP 63 Query: 73 TELRNLFDMREVLELHAAVLVAA-NPPKDLTIVRGWADQIARAVETDDVQLYLEADRNYH 131 +++ +F +R +E AA A + L +A+A +D + + DR +H Sbjct: 64 SDVAEIFALRLGIEPAAAYRAAQLRTEEQLHEADDIIALMAQAEADNDEEAFFTHDRQFH 123 Query: 132 REFIAAAGNDLLTDTVMGLRDKMRLYGISSRAGHERQQASVPEHYRLIELALAGET-EAL 190 R+ + + D V LR R+ G S+ AG++R + E + I A+ ++ E Sbjct: 124 RQIMTMGHSQRGADLVEKLRAHTRILGAST-AGNKRTLGDILEEHEPILDAIKRQSAEMA 182 Query: 191 TALLRTHIR 199 A +R HI+ Sbjct: 183 RATMREHIQ 191 >PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 240 Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 16/206 (7%) Query: 3 QNLREQVLQRVRAEIISGQSLPGTMYSVPSLAASLGVSSTPVREALLELSRGGLVEPMRN 62 + L E V +++++ I+SG+ PG+ S P LA + G+S P+REA+ L L+ + + Sbjct: 16 ETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEGLRLLVRVPH 75 Query: 63 RGFKVVEPTLTELRNLFDMREVLELHAAVLVAANPPKDLTIVRGWADQIARAVETDDVQL 122 G +VV + EL L+++RE LE A L A + + D++ R ++T + Sbjct: 76 VGARVVSLSHAELIELYEIRESLEGMACRLAAER------MSQAEIDELRRVLDTHERDE 129 Query: 123 YLEADRNY---------HREFIAAAGNDLLTDTVMG-LRDKMRLYGISSRAGHERQQASV 172 +A R Y H I +GN LT + G L +R+Y I R + + Sbjct: 130 AFQAGRGYYQQEGDYDFHYRIIQGSGNATLTRMLCGELYQLVRMYRIQYSTTPNRPRQAF 189 Query: 173 PEHYRLIELALAGETEALTALLRTHI 198 EH+R+++ + E L+R HI Sbjct: 190 AEHHRILDAIADRDGELAELLMRRHI 215