BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0130.p         (185 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2002 [I] COG2031 Short chain fatty acids transporter Pae Pseud...   163   2e-40
FN1858 [I] COG2031 Short chain fatty acids transporter Fnu Fusob...    90   2e-18
BH0358 [I] COG2031 Short chain fatty acids transporter Bha Bacil...    90   4e-18
atoE [I] COG2031 Short chain fatty acids transporter Eco Escheri...    89   5e-18
HI0772 [I] COG2031 Short chain fatty acids transporter Hin Haemo...    84   2e-16

>PA2002 [I] COG2031 Short chain fatty acids transporter Pae Pseudomonas
           aeruginosa
          Length = 474

 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 106/141 (75%)

Query: 15  PVADNIVARFSQALVAFAERWFPDAYIFVLIAVIAVAIGAILHGGSPLAVSRAFGDGFWN 74
           P+ ++  ARF+     +AERWFPD+++F  +A++ V++ A+  G  P A ++AFGDGFW+
Sbjct: 6   PIQESRSARFAMRCSNWAERWFPDSWVFAALAILIVSLAALAMGAGPTATAKAFGDGFWS 65

Query: 75  LIPFTMQMALVAIGGYVVAMSPPVAAVLARLASVPKTGRGAVVFVGVLSIFLSLLNWGLS 134
           LIPFTMQMA V IGGYVVA S P + ++  LA VPK GR AV +V ++S+  SLLNWGLS
Sbjct: 66  LIPFTMQMAFVVIGGYVVASSGPASRLIDLLARVPKNGRSAVCWVALVSMLASLLNWGLS 125

Query: 135 LIFSGLLVREIARRTDIRLDY 155
           L+F GLLVR +ARR+D+R+DY
Sbjct: 126 LVFGGLLVRALARRSDLRMDY 146


>FN1858 [I] COG2031 Short chain fatty acids transporter Fnu Fusobacterium
           nucleatum
          Length = 458

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 6/149 (4%)

Query: 8   QTVSLRKPVADNIVARFSQALVAFAERWFPDAYIFVLIAVIAVAIGAI-LHGGSPLAVSR 66
           ++V  RK     I  RF+   V   ERW PD +IF  +    V IGAI L   +PL V  
Sbjct: 2   ESVKERK----GIFKRFTSMCVRVMERWLPDPFIFCALLTFIVFIGAIFLTKATPLQVVG 57

Query: 67  AFGDGFWNLIPFTMQMALVAIGGYVVAMSPPVAAVLARLASVPKTGRGAVVFVGVLSIFL 126
            + DGFW+L+ F+MQMALV + G+ +A S     +L+  AS  K  + A++ V ++S   
Sbjct: 58  FWADGFWSLLSFSMQMALVLVTGHTLASSRLFKKMLSTFASGIKGPKQAILIVSIVSGIA 117

Query: 127 SLLNWGLSLIFSGLLVREIARRTDIRLDY 155
             LNWG  L+   L  +EIA++    +DY
Sbjct: 118 CALNWGFGLVIGALFAKEIAKKVK-GVDY 145


>BH0358 [I] COG2031 Short chain fatty acids transporter Bha Bacillus
           halodurans
          Length = 441

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 75/124 (60%), Gaps = 2/124 (1%)

Query: 33  ERWFPDAYIFV-LIAVIAVAIGAILHGGSPLAVSRAFGDGFWNLIPFTMQMALVAIGGYV 91
           +R+ PD ++FV L+  +  A+  I    +PL + + +G+GFW L+ F+MQM LV + G+V
Sbjct: 13  QRYLPDPFLFVVLLTFLVFALSLIFTESTPLTIVQYWGEGFWGLLSFSMQMVLVLVTGHV 72

Query: 92  VAMSPPVAAVLARLASVPKTGRGAVVFVGVLSIFLSLLNWGLSLIFSGLLVREIARRTDI 151
           +A SP     L  LA +P +   A++ V V+S+  S +NWG  L+   L  +E+A++ D 
Sbjct: 73  LASSPLFKKGLGALAGLPASPGQAILLVTVVSLVASFINWGFGLVIGALFAKELAKKVD- 131

Query: 152 RLDY 155
            +DY
Sbjct: 132 NVDY 135


>atoE [I] COG2031 Short chain fatty acids transporter Eco Escherichia
           coli K12
          Length = 440

 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 20  IVARFSQALVAFAERWFPDAYIF-VLIAVIAVAIGAILHGGSPLAVSRAFGDGFWNLIPF 78
           ++ R S+ +  F  RW PD  IF +L+ ++   I   L   +P+++ + +GDGFWNL+ F
Sbjct: 1   MIGRISRFMTRFVSRWLPDPLIFAMLLTLLTFVIALWLTPQTPISMVKMWGDGFWNLLAF 60

Query: 79  TMQMALVAIGGYVVAMSPPVAAVLARLASVPKTGRGAVVFVGVLSIFLSLLNWGLSLIFS 138
            MQMAL+ + G+ +A S PV ++L   AS  KT    V+ V        ++NWG  L+  
Sbjct: 61  GMQMALIIVTGHALASSAPVKSLLRTAASAAKTPVQGVMLVTFFGSVACVINWGFGLVVG 120

Query: 139 GLLVREIARR 148
            +  RE+ARR
Sbjct: 121 AMFAREVARR 130


>HI0772 [I] COG2031 Short chain fatty acids transporter Hin Haemophilus
           influenzae
          Length = 447

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 1/130 (0%)

Query: 20  IVARFSQALVAFAERWFPDAYIF-VLIAVIAVAIGAILHGGSPLAVSRAFGDGFWNLIPF 78
           +++R S+ +  F  ++ PD  IF VL+  +       L   +P+ +   +G+GFWNL+ F
Sbjct: 1   MISRVSRFMTTFVSKYLPDPLIFAVLLTFVTFICAWGLTDSTPVDLVNMWGNGFWNLLGF 60

Query: 79  TMQMALVAIGGYVVAMSPPVAAVLARLASVPKTGRGAVVFVGVLSIFLSLLNWGLSLIFS 138
            MQMAL+ + G  +A SP +   L+ +AS+ KT    VV V  +     ++NWG  L+  
Sbjct: 61  GMQMALIVVTGNALATSPQIRKFLSTIASIAKTPAQGVVLVTFMGSIACIINWGFGLVVG 120

Query: 139 GLLVREIARR 148
            +  +E+ARR
Sbjct: 121 AMFAKEVARR 130