BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0119.p (565 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1841 [N] COG1345 Flagellar capping protein Ype Yersinia pestis 106 1e-22 ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli... 89 3e-17 ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia co... 89 3e-17 STM1960 [N] COG1345 Flagellar capping protein Sty Salmonella typ... 87 1e-16 fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 87 1e-16 >YPO1841 [N] COG1345 Flagellar capping protein Ype Yersinia pestis Length = 466 Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 113/390 (28%), Positives = 198/390 (50%), Gaps = 46/390 (11%) Query: 33 IDWDALIEAEVNAKLAAATSITTTITANQAKITAYQSLQTELSTLATGLSSLSTSIINSI 92 +D + L+ A+ T +TT T+ ++K+TAY LQ+ L+ L T ++L Sbjct: 13 LDLNTLLSQLSAAEQTRLTPLTTQQTSYKSKLTAYGVLQSALAKLETASTALK------- 65 Query: 93 ATNAFATRAATISSTGDVSASSALNMSVNSGSATGDHTLQITQLATAQKVIGSSQSSSST 152 +A T++ST ++SA + + +S ++ G +++++T LA AQ ++ + S++ Sbjct: 66 -------KADTLNSTAVSGSNSAFSATTDSAASAGTYSIEVTNLAKAQSLLSADVPSATD 118 Query: 153 ALGLSG---TFSLGLSG-GTSTAISITSGM-SMQDIVDTINAQTSTTNVQASIVQVSSGS 207 LG S T ++ G IS+TS S+ I D IN Q + N ASI++ + Sbjct: 119 KLGSSDATRTITITQPGQKEPMKISLTSEQTSLTGIRDAINKQEGSVN--ASIMKADDNT 176 Query: 208 YEMVLT----GTQDAADITYSSTSGDDILNR-LGVTDTS----GAFTDVLQKSQSAEFTL 258 Y + LT GTQ I S +GD+ LN L T +S GA T + K++ A ++ Sbjct: 177 YYLALTSKDTGTQSEMTI---SVAGDETLNNFLNYTPSSTGGSGALTQKV-KAEDATLSV 232 Query: 259 DGIALTRNTNDISDVLSGVTFDLLQPTPSGTSLNISIETDTSQITSALQTFVTNYNAFR- 317 +G+++TR +N I+D GVT +L T G ++I D + +A+Q+FV YN+ + Sbjct: 233 NGVSITRQSNTITDAPQGVTINLKAVTKEGAPEQLTIVRDNTATKAAIQSFVDAYNSLQT 292 Query: 318 ------DQVIAQSAQNSDGTAASSAVLFGDSTMRDIMTQLQQVLSGTVGG--MTMADLGL 369 + ++ Q+ + S+ L GD T+R I TQL+ L+ + G T+A +G+ Sbjct: 293 TFGSLTKYTVVETGQDQ---STSNGALVGDGTLRSIQTQLKSQLASSQSGDLKTLASIGI 349 Query: 370 SFNENNELQLDTGTLSTVLTQNLAGVTQLL 399 + + + +L ++ L+T LT VT Sbjct: 350 TQDLDGKLVINADKLNTALTDKPNSVTAFF 379 >ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli O157:H7 EDL933 Length = 465 Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 112/376 (29%), Positives = 186/376 (49%), Gaps = 46/376 (12%) Query: 47 LAAATSITTTITANQ-----AKITAYQSLQTELSTLATGLSSLSTSIINSIATNAFATRA 101 L AA T T +NQ AK++AY +L++ L+T T ++LS +A Sbjct: 22 LTAAQKATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALS--------------KA 67 Query: 102 ATISSTGDVSASSALNMSVNSGSA-TGDHTLQITQLATAQKVIGSSQSSSST-ALGLSGT 159 S+T +A SA +G+A G +T+ +T LA AQ + + + A+ S + Sbjct: 68 DLFSATSSTTAFSA----TTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDS 123 Query: 160 FSLGLSGGTSTAISI---TSGMSMQDIVDTINAQTSTTNVQASIVQVSSGSYEMVLTGTQ 216 GG I+I + S+ I D IN + V ASI+ V +G Y + +T Sbjct: 124 KLTIQQGGDKDPITIDISAANSSLSGIRDAIN--NAKAGVSASIINVGNGDYRLSVTSND 181 Query: 217 DAADITYS-STSGDDILNRLGVTDTSGAFT--DVLQKSQSAEFTLDGIALTRNTNDISDV 273 D + S SGDD L D S + +V +Q+A+ T++ +A+ ++N ISD Sbjct: 182 TGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDA 241 Query: 274 LSGVTFDLLQPTPSGTSLNISIETDTSQITSALQTFVTNYNAFRD------QVIAQSAQN 327 L +T +L T +L +I DTS+ +A++ +V YN+ D + A A Sbjct: 242 LENITLNLNDVTTGNQTL--TITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDA-G 298 Query: 328 SDGTAASSAVLFGDSTMRDIMTQLQQVLSGTVGG---MTMADLGLSFNENN-ELQLDTGT 383 +D ++S+ L GDST+R I TQL+ +LS TV T+A +G++ + ++ +L+LD Sbjct: 299 ADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADK 358 Query: 384 LSTVLTQNLAGVTQLL 399 L+ L ++ +GV L+ Sbjct: 359 LTAALKKDASGVGALI 374 >ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia coli O157:H7 Length = 465 Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 112/376 (29%), Positives = 186/376 (49%), Gaps = 46/376 (12%) Query: 47 LAAATSITTTITANQ-----AKITAYQSLQTELSTLATGLSSLSTSIINSIATNAFATRA 101 L AA T T +NQ AK++AY +L++ L+T T ++LS +A Sbjct: 22 LTAAQKATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALS--------------KA 67 Query: 102 ATISSTGDVSASSALNMSVNSGSA-TGDHTLQITQLATAQKVIGSSQSSSST-ALGLSGT 159 S+T +A SA +G+A G +T+ +T LA AQ + + + A+ S + Sbjct: 68 DLFSATSSTTAFSA----TTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDS 123 Query: 160 FSLGLSGGTSTAISI---TSGMSMQDIVDTINAQTSTTNVQASIVQVSSGSYEMVLTGTQ 216 GG I+I + S+ I D IN + V ASI+ V +G Y + +T Sbjct: 124 KLTIQQGGDKDPITIDISAANSSLSGIRDAIN--NAKAGVSASIINVGNGDYRLSVTSND 181 Query: 217 DAADITYS-STSGDDILNRLGVTDTSGAFT--DVLQKSQSAEFTLDGIALTRNTNDISDV 273 D + S SGDD L D S + +V +Q+A+ T++ +A+ ++N ISD Sbjct: 182 TGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDA 241 Query: 274 LSGVTFDLLQPTPSGTSLNISIETDTSQITSALQTFVTNYNAFRD------QVIAQSAQN 327 L +T +L T +L +I DTS+ +A++ +V YN+ D + A A Sbjct: 242 LENITLNLNDVTTGNQTL--TITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDA-G 298 Query: 328 SDGTAASSAVLFGDSTMRDIMTQLQQVLSGTVGG---MTMADLGLSFNENN-ELQLDTGT 383 +D ++S+ L GDST+R I TQL+ +LS TV T+A +G++ + ++ +L+LD Sbjct: 299 ADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADK 358 Query: 384 LSTVLTQNLAGVTQLL 399 L+ L ++ +GV L+ Sbjct: 359 LTAALKKDASGVGALI 374 >STM1960 [N] COG1345 Flagellar capping protein Sty Salmonella typhimurium LT2 Length = 467 Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 104/374 (27%), Positives = 178/374 (47%), Gaps = 52/374 (13%) Query: 51 TSITTTITANQAKITAYQSLQTELSTLATGLSSLSTSIINSIATNAFATRAATISSTGDV 110 T IT +AN AK+TAY +L++ L T ++L+ +A ST Sbjct: 31 TPITKQQSANSAKLTAYGTLKSALEKFQTANTALN--------------KADLFKSTVAS 76 Query: 111 SASSALNMSVNSGSATGDHTLQITQLATAQKVIGSSQSSSSTA-LG----LSGTFSLGLS 165 S + L +S +G+A G + + +TQLA AQ + + +++ LG S T + Sbjct: 77 STTEDLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQP 136 Query: 166 GGTST-AISITSG-MSMQDIVDTINAQTSTTNVQASIVQVSSGSYEMVLT---GTQDAAD 220 G I + G SM+ I D IN S + ASIV+V +++VLT GT + Sbjct: 137 GRKEPLEIKLDKGDTSMEAIRDAINDADS--GIAASIVKVKENEFQLVLTANSGTDNTMK 194 Query: 221 ITYSSTSGDDILNRLGVTDT---SGAFTDVLQKSQSAEFTLDGIALTRNTNDISDVLSGV 277 IT GD LN L D+ +G +++ K+++A+ ++GI + R +N ++D G+ Sbjct: 195 IT---VEGDTKLNDLLAYDSTTNTGNMQELV-KAENAKLNVNGIDIERQSNTVTDAPQGI 250 Query: 278 TFDLLQPTPSGTSLNISIETDTSQITSALQTFVTNYNAFRDQV--------IAQSAQNSD 329 T L + T +++ D ++ A++++V YN+ D + + SD Sbjct: 251 TLTLTKKVTDAT---VTVTKDDTKAKEAIKSWVDAYNSLVDTFSSLTKYTAVEPGEEASD 307 Query: 330 GTAASSAVLFGDSTMRDIMTQLQQVL--SGTVGGM-TMADLGLSFN-ENNELQLDTGTLS 385 A L GDS +R I T ++ SG+ TMA++G++ + + +L++D L+ Sbjct: 308 KNGA----LLGDSVVRTIQTGIRAQFANSGSNSAFKTMAEIGITQDGTSGKLKIDDDKLT 363 Query: 386 TVLTQNLAGVTQLL 399 VL N A +LL Sbjct: 364 KVLKDNTAAARELL 377 >fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 Length = 468 Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 110/375 (29%), Positives = 188/375 (50%), Gaps = 41/375 (10%) Query: 47 LAAATSITTTITANQ-----AKITAYQSLQTELSTLATGLSSLSTSIINSIATNAFATRA 101 L AA T T +NQ AK++AY +L++ L+T T ++LS + + S + +T A Sbjct: 22 LTAAQKATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTA 81 Query: 102 ATISSTGDVSASSALNMSVNSGSATGDHTLQITQLATAQ-KVIGSSQSSSSTALGLSGTF 160 + ++ G+ A G +T+ +T LA AQ +++ + TA+ S + Sbjct: 82 FSATTAGNAIA--------------GKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSK 127 Query: 161 SLGLSGGTSTAISI---TSGMSMQDIVDTINAQTSTTNVQASIVQVSSGSYEMVLTGTQD 217 GG I+I + S+ I D IN + V ASI+ V +G Y + +T Sbjct: 128 LTIQQGGDKDPITIDISAANSSLSGIRDAIN--NAKAGVSASIINVGNGEYRLSVTSNDT 185 Query: 218 AADITYS-STSGDDILNRLGVTDTSGAFT--DVLQKSQSAEFTLDGIALTRNTNDISDVL 274 D + S SGDD L D S + +V +Q+A+ T++ +A+ ++N ISD L Sbjct: 186 GLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDAL 245 Query: 275 SGVTFDLLQPTPSGTSLNISIETDTSQITSALQTFVTNYNAFRD------QVIAQSAQNS 328 +T +L T +L +I DTS+ +A++ +V YN+ D + A A + Sbjct: 246 ENITLNLNDVTTGNQTL--TITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDA-GA 302 Query: 329 DGTAASSAVLFGDSTMRDIMTQLQQVLSGTVGG---MTMADLGLSFNENN-ELQLDTGTL 384 D ++S+ L GDST+R I TQL+ +LS TV T+A +G++ + ++ +L+LD L Sbjct: 303 DSQSSSNGALLGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKL 362 Query: 385 STVLTQNLAGVTQLL 399 + L ++ +GV L+ Sbjct: 363 TAALKKDASGVGALI 377