BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0111.p (498 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc1014 [N] COG1256 Flagellar hook-associated protein Atu Agroba... 99 3e-20 SMc03048 [N] COG1256 Flagellar hook-associated protein Sme Sinor... 96 2e-19 BMEII0160 [N] COG1256 Flagellar hook-associated protein Bme Bruc... 95 4e-19 mlr2938 [N] COG1256 Flagellar hook-associated protein Mlo Mesorh... 85 3e-16 TM0083 [N] COG1256 Flagellar hook-associated protein Tma Thermot... 84 5e-16 >AGc1014 [N] COG1256 Flagellar hook-associated protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 492 Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 111/204 (54%), Gaps = 3/204 (1%) Query: 17 TSLANTIAAFESALSSLASTPSSASLQSNAVSALAAVTTQLQQTSSGIQTLRSNADQDIA 76 +S AN + +L A+ PS A+L + AV++ + V + L SS +Q +R AD++++ Sbjct: 98 SSPANYMKELLKSLDGYAAKPSDAALAATAVTSASDVASSLNNASSELQGMRLRADKEMS 157 Query: 77 SSVTDINSDLQQISDLNKQIKQQAAAGQSTADLEDQRNSALQDLASMMNVSYFTTSSGDL 136 V +N L + + N ++K Q A G +D DQR + L+D++S++ ++ + D+ Sbjct: 158 LQVDKLNGLLAKFEEANNEVKAQTAIGGDASDALDQRETLLKDISSIVGINVVNRPNNDV 217 Query: 137 QIYTSSGQALVDSTAHPLSYTALPSVTASTTYSAGSSSGFSGISVNGVDITSQISSGKVS 196 +YT+ G L + +++ P A+TT G++ G+++ T+ ++G + Sbjct: 218 ALYTTDGATLFEIVPRSVTFKTQPGYDATTT---GNAIYIDGVALKAGTGTNTTAAGSLQ 274 Query: 197 ALITLRDQTLPAAQSQLDELARQL 220 L+ +RD P QSQLDE+AR L Sbjct: 275 GLMQVRDDLAPTMQSQLDEIARGL 298 >SMc03048 [N] COG1256 Flagellar hook-associated protein Sme Sinorhizobium meliloti Length = 472 Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 110/201 (54%), Gaps = 9/201 (4%) Query: 23 IAAFESALSSLASTPSSASLQSNAVSALAAVTTQLQQTSSGIQTLRSNADQDIASSVTDI 82 ++AF ++L + ASTP +A++ + VS + + + +TS+ +Q LR ++D+ IA V ++ Sbjct: 104 LSAFRNSLQTFASTPGNATIAATVVSDASDLANSISKTSAAVQDLRLDSDKKIAEEVANL 163 Query: 83 NSDLQQISDLNKQIKQQAAAGQSTADLEDQRNSALQDLASMMNVSYFTTSSGDLQIYTSS 142 N L Q N +KQ AAG D R+ L+ ++ ++ +S T ++ D IYTS Sbjct: 164 NRLLAQFETANNAVKQATAAGTDATAALDDRDKILKQVSELVGISTVTRANNDTVIYTSG 223 Query: 143 GQALVDSTAHPLSYTALPSVTASTTYSAGSSSGFSGISV---NGVDITSQISSGKVSALI 199 G L ++ +++ + A+ T G+ G+ + +G D ++Q GK++ L+ Sbjct: 224 GTVLFETLPREVTFAPKSAYDATVT---GNGIFIDGVPLAAGSGADTSAQ---GKLAGLL 277 Query: 200 TLRDQTLPAAQSQLDELARQL 220 LRD P QSQLDE+AR L Sbjct: 278 QLRDDIAPTFQSQLDEMARGL 298 >BMEII0160 [N] COG1256 Flagellar hook-associated protein Bme Brucella melitensis Length = 484 Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 4/213 (1%) Query: 23 IAAFESALSSLASTPSSASLQSNAVSALAAVTTQLQQTSSGIQTLRSNADQDIASSVTDI 82 I AL + ++PS+++L + VS ++ L + +Q+LR++AD++IA SV +I Sbjct: 104 IGDLRDALQTYVASPSNSALGDSVVSVAQSLANALNDCTRQVQSLRNDADREIADSVANI 163 Query: 83 NSDLQQISDLNKQIKQQAAAGQSTADLEDQRNSALQDLASMMNVSYFTTSSGDLQIYTSS 142 N L + N+ + G+ +D DQR++ L+ L+ + ++ D+ I+ + Sbjct: 164 NDLLAKFEKANQNVVGGTRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAEN 223 Query: 143 GQALVDSTAHPLSYTALPSVTASTTYSAGSSSGFSGISVNGVDITSQISSGKVSALITLR 202 G L ++TA +++ +T AG + G+ ++ +G++S L+ LR Sbjct: 224 GVTLFETTARKVTFEQSAVLTPGV---AGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLR 280 Query: 203 DQTLPAAQSQLDELARQLAASVNAVSNQGTSVP 235 DQ P Q QLDE+AR L +V A S+Q S P Sbjct: 281 DQIAPQYQMQLDEIARGL-VTVFAESDQTGSSP 312 >mlr2938 [N] COG1256 Flagellar hook-associated protein Mlo Mesorhizobium loti Length = 484 Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 17/227 (7%) Query: 3 LYGSTSSSDSSTTG----TSLANTIAAFESALSSLASTPSSASLQSNAVSALAAVTTQLQ 58 LY D S G +S + IA + AL A++PS+ +L S+ + A V L Sbjct: 80 LYSGMDQLDVSVNGVDNASSPSTAIANLQQALQLYATSPSNQNLGSSVIDAAKQVVRSLN 139 Query: 59 QTSSGIQTLRSNADQDIASSVTDINSDLQQISDLNKQIKQQAAAGQSTADLEDQRNSALQ 118 + S IQ R+ D I ++V D+NS L Q D N+ + +G +D DQR++ L+ Sbjct: 140 EGSKAIQDFRTQTDGQIDTAVKDLNSLLGQFQDANQAVISGTRSGTDVSDALDQRDALLK 199 Query: 119 DLASMMNVSYFTTSSGDLQIYTSSGQALVDSTAHPLSYTALPSVTASTTYSAGSSSGFSG 178 +A + +S FT D+ I T G L ++ +S+T A + Sbjct: 200 KIADYIPISTFTRGDNDMVITTGDGTTLFETIPRTVSFTPAAGYAAGAPGNT-------- 251 Query: 179 ISVNGVDIT-----SQISSGKVSALITLRDQTLPAAQSQLDELARQL 220 I ++ V ++ + +SGK++ L+ LRD QSQLDE AR L Sbjct: 252 IYIDNVPVSAGSGGNTTASGKLAGLLQLRDGVASTMQSQLDETARGL 298 >TM0083 [N] COG1256 Flagellar hook-associated protein Tma Thermotoga maritima Length = 858 Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 17/208 (8%) Query: 26 FESALSSLASTPSSASLQSNAVSALAAVTTQLQQTSSGIQTLRSNADQDIASSVTDINSD 85 F +A + S PSS + ++ VS + +Q++ ++ LR + D +I V++IN Sbjct: 126 FWNAFKEVMSDPSSTASKAEVVSRAQQMVSQIKDLYGRLEQLREDIDAEIVQRVSEINQM 185 Query: 86 LQQISDLNKQIKQQAAAGQSTADLEDQRNSALQDLASMMNVSYFTTSSGDLQIYTSSGQA 145 +++++DLN +I+ DL D+R+ L +L+++ N++Y G + + + Sbjct: 186 IKRLADLNNKIRTSMMLNSPPNDLLDERDRILDELSNLANINYTEAEDGQITLRIGNQIV 245 Query: 146 LVDSTAHPLSYTALPSVTASTTYSAGSSSGFSGISVNGVDITSQ--ISSGKVSALITLRD 203 L ST L P Y G F G SQ +S GK+ ALI LRD Sbjct: 246 LNGSTYRELRALERP-------YGKGYHELFVG--------NSQLILSDGKLKALIDLRD 290 Query: 204 QTLPAAQSQLDELARQLAASVNAVSNQG 231 ++ +LDE + S+N V G Sbjct: 291 SSIVKYMRKLDEFVLFITDSLNLVHRDG 318