BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0022.p         (262 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa2353 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, ...   199   5e-51
yagR [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, lar...   195   9e-50
ZyagR [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, la...   190   3e-48
ECs0314 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, ...   190   3e-48
DRA0231 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, ...   128   2e-29

>SMa2353 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large
           subunit CoxL/CutL homologs Sme Sinorhizobium meliloti
          Length = 733

 Score =  199 bits (506), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 117/154 (75%)

Query: 1   MRFEHPATFNPIDQLKVIGHPTSRIEGPLKTTGTAPYAYERHDVAANQAYGYVVGSAIGK 60
           MRF+ PAT NPIDQ KVIG P +RI+GPLKTTG A YAYE HD     AYGY+VGSAI K
Sbjct: 2   MRFDTPATTNPIDQGKVIGKPITRIDGPLKTTGKAIYAYEWHDPNTRYAYGYIVGSAIAK 61

Query: 61  GRIGSIDLEAAKAAPGVLAVVTADNAGKLGKGERNAAPLLGGPEIAHYHQAVAIVVAGTF 120
           GRI S+D+ AA+ APGV+AVVT+D  G+L KG+ N A L GG EI HYHQA+A+VVA TF
Sbjct: 62  GRIRSMDVAAARNAPGVIAVVTSDGVGELKKGKYNTAKLFGGTEIQHYHQAIAVVVAETF 121

Query: 121 EQARAAAQLVRIDYVKGDGKFDLAAERDKGITPH 154
           E+ARAAA LV++DY +  G FDLAA +D  + P 
Sbjct: 122 EEARAAAALVKVDYAEEKGAFDLAAAKDSAVKPE 155


>yagR [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large
           subunit CoxL/CutL homologs Eco Escherichia coli K12
          Length = 732

 Score =  195 bits (495), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 96/147 (65%), Positives = 116/147 (78%)

Query: 1   MRFEHPATFNPIDQLKVIGHPTSRIEGPLKTTGTAPYAYERHDVAANQAYGYVVGSAIGK 60
           M+F+ PA  NPIDQLKV+G P  RI+GPLKTTGTA YAYE H+ A N AYGY+VGSAI K
Sbjct: 1   MKFDKPAGENPIDQLKVVGRPHDRIDGPLKTTGTARYAYEWHEEAPNAAYGYIVGSAIAK 60

Query: 61  GRIGSIDLEAAKAAPGVLAVVTADNAGKLGKGERNAAPLLGGPEIAHYHQAVAIVVAGTF 120
           GR+ ++D +AA+ APGVLAV+TA NAG LGKG++N A LLGGP I HYHQA+A+VVA TF
Sbjct: 61  GRLTALDTDAAQKAPGVLAVITASNAGALGKGDKNTARLLGGPTIEHYHQAIALVVAETF 120

Query: 121 EQARAAAQLVRIDYVKGDGKFDLAAER 147
           EQARAAA LV+  Y +  G + LA E+
Sbjct: 121 EQARAAASLVQAHYRRNKGAYSLADEK 147


>ZyagR [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large
           subunit CoxL/CutL homologs EcZ Escherichia coli O157:H7
           EDL933
          Length = 732

 Score =  190 bits (482), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 114/147 (77%)

Query: 1   MRFEHPATFNPIDQLKVIGHPTSRIEGPLKTTGTAPYAYERHDVAANQAYGYVVGSAIGK 60
           M+F+ PA  NPIDQLKV+G P  RI+GPLKTTGTA YAYE H+ + N AYGY+VGSAI K
Sbjct: 1   MKFDKPAGENPIDQLKVVGRPHDRIDGPLKTTGTARYAYEWHEESPNAAYGYIVGSAIAK 60

Query: 61  GRIGSIDLEAAKAAPGVLAVVTADNAGKLGKGERNAAPLLGGPEIAHYHQAVAIVVAGTF 120
           GR+ ++D +AA+ APGVL V+TA NAG L KG++N A LLGGP I HYHQA+A+VVA TF
Sbjct: 61  GRLTALDTDAAQKAPGVLPVITASNAGALSKGDKNTARLLGGPTIEHYHQAIALVVAETF 120

Query: 121 EQARAAAQLVRIDYVKGDGKFDLAAER 147
           EQARAAA LV+  Y +  G + LA E+
Sbjct: 121 EQARAAASLVQAHYRRNKGAYSLADEK 147


>ECs0314 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large
           subunit CoxL/CutL homologs Ecs Escherichia coli O157:H7
          Length = 732

 Score =  190 bits (482), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 114/147 (77%)

Query: 1   MRFEHPATFNPIDQLKVIGHPTSRIEGPLKTTGTAPYAYERHDVAANQAYGYVVGSAIGK 60
           M+F+ PA  NPIDQLKV+G P  RI+GPLKTTGTA YAYE H+ + N AYGY+VGSAI K
Sbjct: 1   MKFDKPAGENPIDQLKVVGRPHDRIDGPLKTTGTARYAYEWHEESPNAAYGYIVGSAIAK 60

Query: 61  GRIGSIDLEAAKAAPGVLAVVTADNAGKLGKGERNAAPLLGGPEIAHYHQAVAIVVAGTF 120
           GR+ ++D +AA+ APGVL V+TA NAG L KG++N A LLGGP I HYHQA+A+VVA TF
Sbjct: 61  GRLTALDTDAAQKAPGVLPVITASNAGALSKGDKNTARLLGGPTIEHYHQAIALVVAETF 120

Query: 121 EQARAAAQLVRIDYVKGDGKFDLAAER 147
           EQARAAA LV+  Y +  G + LA E+
Sbjct: 121 EQARAAASLVQAHYRRNKGAYSLADEK 147


>DRA0231 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large
           subunit CoxL/CutL homologs Dra Deinococcus radiodurans
          Length = 742

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 96/153 (62%), Gaps = 7/153 (4%)

Query: 1   MRFEHPATFNPIDQLKVIGHPTSRIEGPLKTTGTAPYAYERHDVAA-NQAYGYVVGSAIG 59
           M+F  PA   P+DQ +V+  P  R EGPLK TG A YAYE  D A  + AYG+V+GS I 
Sbjct: 1   MKFTEPAGPTPLDQERVLTRPHPRKEGPLKVTGQATYAYEYRDAALRDAAYGFVLGSDIA 60

Query: 60  KGRIGSIDLEAAKAAPGVLAVVTADNAGKLGKG------ERNAAPLLGGPEIAHYHQAVA 113
            G +  ID   A+AAPGV  V+T  N    G+       + +A P L G  I H+ QA+A
Sbjct: 61  HGSLLDIDTAEAEAAPGVQLVLTHKNMPAQGENPGVAPQQDDATPQLAGTAIHHHDQAIA 120

Query: 114 IVVAGTFEQARAAAQLVRIDYVKGDGKFDLAAE 146
           +VVA TFEQARAAA+L+R+ Y + DG +DLAA+
Sbjct: 121 LVVADTFEQARAAARLIRVRYRRLDGAYDLAAQ 153