BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0014.p         (69 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc01428 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti   103   7e-23
CC2903 [K] COG1278 Cold shock proteins Ccr Caulobacter vibrioides     100   6e-22
AGc161 [K] COG1278 Cold shock proteins Atu Agrobacterium tumefac...   100   7e-22
SMa0126 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti     99   3e-21
mlr8184 [K] COG1278 Cold shock proteins Mlo Mesorhizobium loti         97   7e-21

>SMc01428 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti
          Length = 69

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 55/67 (82%)

Query: 1  MPTGTVKWFNGQKGFGFIQPDDGTNDVFVHISAVERAGLGGLAEGQKLSFELKIDKMRGK 60
          M +GTVKWFN  KGFGFIQPDDG  DVFVHISAVERAGL  L +GQK+SFEL  D+  GK
Sbjct: 1  MASGTVKWFNSTKGFGFIQPDDGAADVFVHISAVERAGLSTLKDGQKVSFELTQDRRSGK 60

Query: 61 TSAEDLR 67
          TSA++LR
Sbjct: 61 TSADNLR 67


>CC2903 [K] COG1278 Cold shock proteins Ccr Caulobacter vibrioides
          Length = 69

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 56/69 (81%)

Query: 1  MPTGTVKWFNGQKGFGFIQPDDGTNDVFVHISAVERAGLGGLAEGQKLSFELKIDKMRGK 60
          M TGTVKWFN  KGFGFIQPD+G  D+FVHISAVER+GLG L EGQK+S+E ++D+  GK
Sbjct: 1  MATGTVKWFNSTKGFGFIQPDNGGADIFVHISAVERSGLGSLNEGQKISYEPEVDRRSGK 60

Query: 61 TSAEDLRLA 69
          TSA  L+ A
Sbjct: 61 TSAGQLQAA 69


>AGc161 [K] COG1278 Cold shock proteins Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 163

 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 53/66 (80%)

Query: 1   MPTGTVKWFNGQKGFGFIQPDDGTNDVFVHISAVERAGLGGLAEGQKLSFELKIDKMRGK 60
           M TGTVKWFN  KG+GFIQPDDG+ DVFVHISAVERAGL  L +GQKLS+EL  D+  GK
Sbjct: 95  MATGTVKWFNATKGYGFIQPDDGSQDVFVHISAVERAGLTALNDGQKLSYELMQDRRSGK 154

Query: 61  TSAEDL 66
            SA +L
Sbjct: 155 MSAGEL 160


>SMa0126 [K] COG1278 Cold shock proteins Sme Sinorhizobium meliloti
          Length = 69

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 52/69 (75%)

Query: 1  MPTGTVKWFNGQKGFGFIQPDDGTNDVFVHISAVERAGLGGLAEGQKLSFELKIDKMRGK 60
          M TGTVKWFN  KGFGFI PDDG+ DVFVHISAVERAG+  + EGQKL FEL+ D   GK
Sbjct: 1  MTTGTVKWFNSTKGFGFIAPDDGSADVFVHISAVERAGMNSIVEGQKLGFELERDNKSGK 60

Query: 61 TSAEDLRLA 69
           SA  LR A
Sbjct: 61 MSAGQLRAA 69


>mlr8184 [K] COG1278 Cold shock proteins Mlo Mesorhizobium loti
          Length = 69

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 53/69 (76%)

Query: 1  MPTGTVKWFNGQKGFGFIQPDDGTNDVFVHISAVERAGLGGLAEGQKLSFELKIDKMRGK 60
          M TGTVKWFN  KGFGFIQPDDG+ DVFVHISAVERAG+  + EGQKL +E+  D   GK
Sbjct: 1  MSTGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGMRDIVEGQKLGYEMVRDNKSGK 60

Query: 61 TSAEDLRLA 69
           SA+ L+ A
Sbjct: 61 MSADQLKAA 69