BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0007.p (1059 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC1844 [LK] COG1197 Transcription-repair coupling factor (superf... 560 e-159 mll0827 [LK] COG1197 Transcription-repair coupling factor (super... 481 e-135 AGc3270 [LK] COG1197 Transcription-repair coupling factor (super... 477 e-134 BMEII0688 [LK] COG1197 Transcription-repair coupling factor (sup... 475 e-133 SMc04450 [LK] COG1197 Transcription-repair coupling factor (supe... 474 e-133 >CC1844 [LK] COG1197 Transcription-repair coupling factor (superfamily II helicase) Ccr Caulobacter vibrioides Length = 1155 Score = 560 bits (1444), Expect = e-159, Method: Compositional matrix adjust. Identities = 381/1068 (35%), Positives = 548/1068 (51%), Gaps = 116/1068 (10%) Query: 52 FLAESENRAERLGSVLHSLDPSLEVLVFPRLNTLPFDGLEPSREIAGRRSSVLRRLAR-- 109 F+A RA L P +E ++FP + LP+D + PS ++ R + L RLAR Sbjct: 42 FVARDTARAGAFIDALKFFAPEIEAVLFPSWDCLPYDRIGPSSGVSATRMATLSRLARGL 101 Query: 110 -SKKPVFLVSTAEAIMERLPLPASSARLSISLKVGAGYSEQELKDRLEALGYDLDEEADY 168 K LV A A+++R+P R S + KVGA ++L+ GY Sbjct: 102 GESKAAILVIAAPALLQRVPTKEVLLRASYAAKVGANVDIKDLERYFAVNGYTRASTVSE 161 Query: 169 PGSALFHGMTFEVFPAGALGPFRIEHSGGVIRRIAGVDPDEHDVVFDAEELHIDPMSERI 228 G G +V+P A P R++ G + I DP+ +E+ + P+SE + Sbjct: 162 RGEFAIRGGVIDVYPPAAEEPVRLDLFGDTLESIRAFDPETQRSTKQLKEIDLLPVSEAL 221 Query: 229 ALEGKRVQR------------------AALPDYCQRA---HWI----------------- 250 L+ + R AA+ + +RA HW+ Sbjct: 222 -LDADGISRFRKGYVAEFGAPGDDALYAAVSEGGRRAGLEHWLPLFYERMATLFDYLPAG 280 Query: 251 ADAGVSGHA----DSWLSTIKEA------AGRREAERE------YLGPADWKR-LAKRM- 292 A GV A D L+ I++A A R+ A R YL +W+R L+ R Sbjct: 281 ALIGVDNQATEARDERLAMIQDAYDARASADRKSAYRPLAPEALYLTAEEWERELSDRTH 340 Query: 293 -----------------SSLPRKAAFIATPD----FSKVASSRKALRAFVADTQRSGSRL 331 + L R A D F A KAL A G R+ Sbjct: 341 RRFTPFQPQGLDVIDLGAKLGRVFAAERAQDSVNLFEATADHAKALAA-------QGKRV 393 Query: 332 LFVAAVE---DDLRAMERMSGIKAERFADWNEAAKGRGGE--GGLLADFDTGFIGSGRKP 386 LF + E + L M G+K +A + +AAK + ++ D GF Sbjct: 394 LFASWSEGSSERLGTMLADHGLKKIPYAGYWQAAKANDPKVPQRVVLPLDHGF---ETDS 450 Query: 387 LVVVTATDVLGSRAHHPQPMARAWSSAFDHPDVPERGAVVVHLQRGLAVLDGLQTLDMGK 446 L V++ TD+LG R P+ RA ++ G +VVH+ G+ +GL+TLD+ + Sbjct: 451 LAVISETDILGDRLARPRKKRRA-ANFLAEASALTPGDLVVHIDHGIGRYEGLKTLDV-Q 508 Query: 447 GSSREMIRLAFAGDDAVLVPPADLALIWPY-AAELGKLALDRADGSTWWTRRTKAEQEIQ 505 G+ + + L + G+ + +P ++ L+ Y AA+ + LD+ G+ W R+ KA++ ++ Sbjct: 509 GAPHDCLDLLYGGEAKLYLPVENIDLLTRYGAADAENVQLDKLGGAAWQGRKAKAKERLR 568 Query: 506 TAAK-------AXRRRRAPKLVAPGPAYERFVARFPYFTTVDQAKAIRDVLDDLASGHPM 558 A+ A + + + P ++ F ARFPY T DQ AI DVL+DL+SG PM Sbjct: 569 VMAEGLIQIAAARQLKTVEETDPPSGVFDEFCARFPYEETDDQLSAIHDVLEDLSSGKPM 628 Query: 559 DRVVCGDVGFGKTEVALRAAAAVALSGKQVAVVVPTTVLARQHVATFRKRFAPLGIEVGS 618 DR++CGDVGFGKTEVALRAA VA+SGKQVA+V PTT+LARQH TF+ RF ++V Sbjct: 629 DRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCPTTLLARQHYKTFKDRFQGWPVKVTR 688 Query: 619 LSRATSSPEIKETKEGLRSGKMKVVVGTQAIASKDVKFAKLSLIIVDEEQHFGAAEKAKL 678 LSR + E ET+EGL +G+ ++VVGT AI SK V F L L+IVDEEQHFG K KL Sbjct: 689 LSRLVTGKEAAETREGLANGQFEIVVGTHAILSKQVSFKDLGLVIVDEEQHFGVKHKEKL 748 Query: 679 SGLAKGAHTLWMSATPIPRTLAAGLAGFRELSVIASPPVHRLPVATKIAPLSDAAIAAAL 738 L H L ++ATPIPRTL L+G RE+S+IA+PPV RL V T I+P + AL Sbjct: 749 KELRADVHMLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVRTYISPFDPVTLREAL 808 Query: 739 LREQRRHGQSFLICPRIQDLDPMLARVQSMAPELRIVCLHGKLPADELDDRMMSFVEGEA 798 LRE+ R GQS+ + PRI+DL+ + +++ PE++ V HG++ A +L+D M +F EG+ Sbjct: 809 LREKYRGGQSYYVVPRIKDLEDIEKFLRTQVPEVKFVVGHGQMAATQLEDVMTAFYEGQY 868 Query: 799 DVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGTRAFAYMLT---ESS 855 DVLLAT IVESGLDIP ANT++V + FGLAQL+Q+RGRVGR RA+AY+ T +S Sbjct: 869 DVLLATTIVESGLDIPSANTLIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTPVEKSL 928 Query: 856 SEQSGKRLAVLEEFSRPGAGFAISERDLDLRGAGDLLSERQSGHVQVFGPVLYSHLLKQA 915 + + KRL VL+ GAGF ++ DLD RG G+LL + QSGH++ G LY +L+ A Sbjct: 929 TPSAEKRLQVLQSLDSLGAGFQLASHDLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDA 988 Query: 916 SEKTNDRSADL-------WVPDLNLPLADLLPRSYVQSESVRLEIYGRAARCWSEDDLED 968 + R W P +N A ++P YV +VRL +Y R + D E Sbjct: 989 VAELRQRQGQEALLEDRGWSPQINTGAAVMIPDDYVPDLNVRLSLYRRLSEAEQAADREA 1048 Query: 969 LEEETSRRFGRLPSAGRDFFAAARLRIDCKRRGIVRLDVGPEAVAATF 1016 L E RFG LP ++ C+ + ++DVGP+ A+F Sbjct: 1049 LAAEMIDRFGPLPPETDSLLKVVAIKGLCREANVAKIDVGPKGAVASF 1096 >mll0827 [LK] COG1197 Transcription-repair coupling factor (superfamily II helicase) Mlo Mesorhizobium loti Length = 1165 Score = 481 bits (1238), Expect = e-135, Method: Compositional matrix adjust. Identities = 267/645 (41%), Positives = 376/645 (58%), Gaps = 18/645 (2%) Query: 387 LVVVTATDVLGSRAHHPQPMARAWSSAFDHPDVPERGAVVVHLQRGLAVLDGLQTLDMGK 446 LVVV D+LG R + S G +VVH G+ GL+T++ Sbjct: 463 LVVVAEQDILGDRLIRRSKRKKRASDFIAEASALSTGDIVVHADHGIGRFIGLRTIE-AV 521 Query: 447 GSSREMIRLAFAGDDAVLVPPADLALIWPYAAELGKLALDRADGSTWWTRRTK------- 499 G+ + + + +AGDD + +P ++ L+ Y ++ + LD+ G W +R+ K Sbjct: 522 GAPHDCLEIHYAGDDRLFLPVENIELLSRYGSDSAEATLDKLGGGAWQSRKAKLKRRLLD 581 Query: 500 -AEQEIQTAAKAXRRRRAPKLVAPGPAYERFVARFPYFTTVDQAKAIRDVLDDLASGHPM 558 A Q I+ AA+ + R AP LV Y+ F ARFPY T DQ AI V DDL +G PM Sbjct: 582 MAGQLIRIAAE-RQMRAAPALVPAEGLYDEFAARFPYEETDDQQTAIDSVRDDLGAGKPM 640 Query: 559 DRVVCGDVGFGKTEVALRAAAAVALSGKQVAVVVPTTVLARQHVATFRKRFAPLGIEVGS 618 DR++CGDVGFGKTEVALRAA A+ G QVAVVVPTT+L+RQH TF +RF+ L I V Sbjct: 641 DRLICGDVGFGKTEVALRAAFIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPIRVAQ 700 Query: 619 LSRATSSPEIKETKEGLRSGKMKVVVGTQAIASKDVKFAKLSLIIVDEEQHFGAAEKAKL 678 SR + E+ ETK+ L G++ +VVGT A+ + F L L+I+DEEQHFG K +L Sbjct: 701 ASRLVGAKELAETKKALAEGQVDIVVGTHALLGSSISFKNLGLLIIDEEQHFGVKHKERL 760 Query: 679 SGLAKGAHTLWMSATPIPRTLAAGLAGFRELSVIASPPVHRLPVATKIAPLSDAAIAAAL 738 L H L +SATPIPRTL L G RELS+IA+PPV R+ V T I+P I L Sbjct: 761 KDLKTDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVIRETL 820 Query: 739 LREQRRHGQSFLICPRIQDLDPMLARVQSMAPELRIVCLHGKLPADELDDRMMSFVEGEA 798 LRE+ R G SF + PRI DL + ++ PEL++ HG++P ELDD M +F +G+ Sbjct: 821 LRERYRGGHSFYVVPRISDLSEIHEFLKESVPELKVAVAHGQMPPGELDDIMNAFYDGQY 880 Query: 799 DVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGTRAFAYMLTESS--- 855 DVLL+T IVESGLDIP ANT+++ + FGL+QL+QLRGRVGR RA+A ++ Sbjct: 881 DVLLSTTIVESGLDIPTANTLIIHRADMFGLSQLYQLRGRVGRSKVRAYALFTLPANRKL 940 Query: 856 SEQSGKRLAVLEEFSRPGAGFAISERDLDLRGAGDLLSERQSGHVQVFGPVLYSHLLKQA 915 ++ + +RL VL+ GAGF ++ DLD+RGAG+LL E QSGH++ G LY +L++A Sbjct: 941 TDTAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEA 1000 Query: 916 SEKTNDRSADL----WVPDLNLPLADLLPRSYVQSESVRLEIYGRAARCWSEDDLEDLEE 971 + D S ++ W P + + A ++P SYV +RL +Y R + ++++ Sbjct: 1001 VAEVKD-SGEVQDGGWSPQIAVGTAVMIPESYVPDLQLRLALYRRLGDLENTEEIDAFGA 1059 Query: 972 ETSRRFGRLPSAGRDFFAAARLRIDCKRRGIVRLDVGPEAVAATF 1016 E RFG LP + ++ C++ + +LD GP+ V F Sbjct: 1060 ELIDRFGPLPDEVKHLLKIVFIKALCRKANVEKLDAGPKGVVIHF 1104 >AGc3270 [LK] COG1197 Transcription-repair coupling factor (superfamily II helicase) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 1165 Score = 477 bits (1227), Expect = e-134, Method: Compositional matrix adjust. Identities = 271/672 (40%), Positives = 378/672 (56%), Gaps = 27/672 (4%) Query: 371 LLADFDTGFIGSGRKPLVVVTATDVLGSRAHHPQPMARAWSSAFDHPDVPERGAVVVHLQ 430 L A F+TG L V+ D+LG R + + + G++VVH + Sbjct: 456 LEAGFETG-------TLAVIGEQDILGDRMVRRSKRRKRGADFIAEVAGLDEGSLVVHAE 508 Query: 431 RGLAVLDGLQTLDMGKGSSREMIRLAFAGDDAVLVPPADLALIWPYAAELGKLALDRADG 490 G+ GLQT++ G+ R + L +A D + +P ++ L+ Y ++ + LD+ G Sbjct: 509 HGIGRFVGLQTIE-AAGAPRACLELHYADDAKLFLPVENIDLLSRYGSDAAEATLDKLGG 567 Query: 491 STWWTRRTKAEQ-------EIQTAAKAXRRRRAPKLVAPGPAYERFVARFPYFTTVDQAK 543 W R+ K ++ E+ A A R AP L+AP Y+ F ARFPY T DQ Sbjct: 568 GAWQMRKAKLKKRLLDMADELIRIAAARLVRHAPALIAPDGLYDEFAARFPYDETEDQLN 627 Query: 544 AIRDVLDDLASGHPMDRVVCGDVGFGKTEVALRAAAAVALSGKQVAVVVPTTVLARQHVA 603 AI V DDL +G PMDR++CGDVGFGKTEVALRAA A++G QVAVVVPTT+LARQH Sbjct: 628 AIEAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLAAMNGVQVAVVVPTTLLARQHFR 687 Query: 604 TFRKRFAPLGIEVGSLSRATSSPEIKETKEGLRSGKMKVVVGTQAIASKDVKFAKLSLII 663 TF +RF L I V SR S E+ TK+ + GK +VVGT A+ + FA L L+I Sbjct: 688 TFSERFRGLPIRVQQASRLVGSKELALTKKEVAEGKTDIVVGTHALLGAGISFANLGLLI 747 Query: 664 VDEEQHFGAAEKAKLSGLAKGAHTLWMSATPIPRTLAAGLAGFRELSVIASPPVHRLPVA 723 +DEEQHFG K +L L H L +SATPIPRTL + G RELS+I +PPV R+ V Sbjct: 748 IDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVR 807 Query: 724 TKIAPLSDAAIAAALLREQRRHGQSFLICPRIQDLDPMLARVQSMAPELRIVCLHGKLPA 783 T I+P I L+RE R GQSF +CPR+ DL + A +QS PEL++ HG++ A Sbjct: 808 TFISPFDPLVIRETLMREHYRGGQSFYVCPRLADLADIHAFLQSDVPELKVAVAHGQMAA 867 Query: 784 DELDDRMMSFVEGEADVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGG 843 EL+D M +F +G+ DVLL+T IVESGLD+P ANT++V + FGLAQL+QLRGRVGR Sbjct: 868 GELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSK 927 Query: 844 TRAFAYM---LTESSSEQSGKRLAVLEEFSRPGAGFAISERDLDLRGAGDLLSERQSGHV 900 RAFA + + + + +RL VL+ GAGF ++ DLD+RGAG+LL E QSGH+ Sbjct: 928 VRAFALFTLPVNKVLTTMAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHI 987 Query: 901 QVFGPVLYSHLLKQA------SEKTNDRSADLWVPDLNLPLADLLPRSYVQSESVRLEIY 954 + G LY +L++A E+ D W P +++ + ++P YV +R+ +Y Sbjct: 988 KEVGFELYQQMLEEAVAEVKGDEEVRDSG---WSPQISVGTSVMIPEDYVPDLHLRMGLY 1044 Query: 955 GRAARCWSEDDLEDLEEETSRRFGRLPSAGRDFFAAARLRIDCKRRGIVRLDVGPEAVAA 1014 R +++ E RFG LP + ++ C+ + ++D GP+ V Sbjct: 1045 RRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKIVYIKSLCRTANVEKVDAGPKGVVV 1104 Query: 1015 TFLPGRLPKSKA 1026 F P A Sbjct: 1105 QFRNKEFPNPAA 1116 Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 16/282 (5%) Query: 11 AGAKKKSKGSARSPIS-SSSPLGMLALHLLEQWKKSGRDGVVFLAESENRAERLGSVLHS 69 AG K SA +P++ + P GM AL LL ++G V ++ R L +L Sbjct: 3 AGFDAKLVASADTPLTIGNVPSGMEAL-LLADMARAG-TSVAYVMSDGQRVADLEQILGF 60 Query: 70 LDPSLEVLVFPRLNTLPFDGLEPSREIAGRRSSVLRRL---ARSKKPVFLVSTAEAIMER 126 + P + VL P + LP+D + PS + + RR + L L A+ P ++ T A++++ Sbjct: 61 VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQK 120 Query: 127 LPLPASSARLSISLKVGAGYSEQELKDRLEALGYDLDEEADYPGSALFHGMTFEVFPAGA 186 + L S + G +++ RLE G+D G G +VF G Sbjct: 121 MAPRDVIESLGFSARPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGT 180 Query: 187 LGPFRIEHSGGVIRRIAGVDPDEHDVVFDAEELHIDPMSERIALEGKRVQRAALPDYCQR 246 P R++ G + I DP + A L ++PMSE + L + R R Sbjct: 181 EEPVRLDFFGDTLESIRTFDPASQRTIAQARSLDLNPMSE-VTLTPDTIGRF-------R 232 Query: 247 AHWIADAGVSGHADSWLSTIKEAAGRREAEREYLGPADWKRL 288 ++++ G + D+ + E GRR A E+ P +++L Sbjct: 233 KNYLSLFGAATRDDALYQAVSE--GRRYAGMEHWLPLFYEQL 272 >BMEII0688 [LK] COG1197 Transcription-repair coupling factor (superfamily II helicase) Bme Brucella melitensis Length = 1170 Score = 475 bits (1223), Expect = e-133, Method: Compositional matrix adjust. Identities = 267/644 (41%), Positives = 365/644 (56%), Gaps = 16/644 (2%) Query: 387 LVVVTATDVLGSRAHHPQPMARAWSSAFDHPDVPERGAVVVHLQRGLAVLDGLQTLDMGK 446 LVVV D+LG R + G +VVH+ G+ GL+T+ Sbjct: 470 LVVVAEQDILGDRLIRRSRRRKRDQDFISEVASLTAGDIVVHVDHGIGRFIGLKTI-TAA 528 Query: 447 GSSREMIRLAFAGDDAVLVPPADLALIWPYAAELGKLALDRADGSTWWTRRTKAEQE--- 503 G+ + + + +AGDD + +P ++ L+ Y +E LD+ G W R+ K ++ Sbjct: 529 GAPHDCLEIHYAGDDRLFLPVENIELLSRYGSEGSDAVLDKLGGGAWQARKAKLKKRLLE 588 Query: 504 -----IQTAAKAXRRRRAPKLVAPGPAYERFVARFPYFTTVDQAKAIRDVLDDLASGHPM 558 IQ AA+ + R AP + PG Y F ARFPY T DQ AI V DDLA G PM Sbjct: 589 IAGHLIQIAAE-RQMRGAPVMTPPGGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPM 647 Query: 559 DRVVCGDVGFGKTEVALRAAAAVALSGKQVAVVVPTTVLARQHVATFRKRFAPLGIEVGS 618 DR++CGDVGFGKTEVALRAA A+SG QVAVVVPTT+L+RQH TF RF L I V Sbjct: 648 DRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAH 707 Query: 619 LSRATSSPEIKETKEGLRSGKMKVVVGTQAIASKDVKFAKLSLIIVDEEQHFGAAEKAKL 678 SR + E+ TK+GL G + +VVGT A+ +KF L L+I+DEEQHFG K L Sbjct: 708 ASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKEWL 767 Query: 679 SGLAKGAHTLWMSATPIPRTLAAGLAGFRELSVIASPPVHRLPVATKIAPLSDAAIAAAL 738 L H L +SATPIPRTL L G RELS+I +PPV R+ V T ++P I L Sbjct: 768 KELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETL 827 Query: 739 LREQRRHGQSFLICPRIQDLDPMLARVQSMAPELRIVCLHGKLPADELDDRMMSFVEGEA 798 LRE+ R GQSF + PRI DL + ++ PEL++ HG++ LDD M +F +G+ Sbjct: 828 LRERYRGGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQY 887 Query: 799 DVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGTRAFAYMLTESS--- 855 DVLL+T IVESGLDIP ANT++V + FGLAQL+QLRGRVGR RAFA + Sbjct: 888 DVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKML 947 Query: 856 SEQSGKRLAVLEEFSRPGAGFAISERDLDLRGAGDLLSERQSGHVQVFGPVLYSHLLKQA 915 ++ + +RL VL+ GAGF ++ D+D+RGAG+LL E QSGH++ G LY +L++A Sbjct: 948 TQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEA 1007 Query: 916 S---EKTNDRSADLWVPDLNLPLADLLPRSYVQSESVRLEIYGRAARCWSEDDLEDLEEE 972 + + + W P + + A ++P +YV +RL +Y R A D++ E Sbjct: 1008 VATLKGSGEVEDSQWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQDIDAFGAE 1067 Query: 973 TSRRFGRLPSAGRDFFAAARLRIDCKRRGIVRLDVGPEAVAATF 1016 RFG +P + ++ C+R + +LD GP+ V F Sbjct: 1068 LIDRFGPMPDEVQHLLKIVYIKALCRRANVEKLDAGPKGVVIQF 1111 Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 104/245 (42%), Gaps = 13/245 (5%) Query: 47 RDGVVFLAESENRAERLGSVLHSLDPSLEVLVFPRLNTLPFDGLEPSREIAGRRSSVLRR 106 R ++++ R L VL + P L VL P + LP+D + P + A RR + L Sbjct: 45 RGPIMYIVRDGQRIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSA 104 Query: 107 LARSKK---PVFLVSTAEAIMERLPLPASSARLSISLKVGAGYSEQELKDRLEALGYDLD 163 L KK P +++TA A++++LP A+ IS + G +L RLE G++ Sbjct: 105 LCALKKAPHPAVILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERV 164 Query: 164 EEADYPGSALFHGMTFEVFPAGALGPFRIEHSGGVIRRIAGVDPDEHDVVFDAEELHIDP 223 G G +++ GA P R++ G + I DP +E + P Sbjct: 165 STVRDIGEYAVRGGILDLYAPGAEEPLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQP 224 Query: 224 MSERIALEGKRVQRAALPDYCQRAHWIADAGVSGHADSWLSTIKEAAGRREAEREYLGPA 283 MSE I L + R R +++A G D+ I E GRR A E+ P Sbjct: 225 MSE-ITLSSDMISRF-------RKNYVAMFGAPQRDDALYQAISE--GRRFAGMEHWLPL 274 Query: 284 DWKRL 288 + + Sbjct: 275 FYDNM 279 >SMc04450 [LK] COG1197 Transcription-repair coupling factor (superfamily II helicase) Sme Sinorhizobium meliloti Length = 1171 Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust. Identities = 272/672 (40%), Positives = 373/672 (55%), Gaps = 27/672 (4%) Query: 371 LLADFDTGFIGSGRKPLVVVTATDVLGSRAHHPQPMARAWSSAFDHPDVPERGAVVVHLQ 430 L A F+TG LVV+ D+LG R + + + G+ VVH + Sbjct: 461 LEAGFETG-------DLVVIGEQDILGDRLVRRSKRRKRGADFIAEVTGLDEGSYVVHAE 513 Query: 431 RGLAVLDGLQTLDMGKGSSREMIRLAFAGDDAVLVPPADLALIWPYAAELGKLALDRADG 490 G+ GL+T++ G+ + + L +A D + +P ++ L+ Y +E LD+ G Sbjct: 514 HGIGRFVGLRTIE-AAGAPHDCLELVYADDAKLFLPVENIELLSRYGSEGTDAVLDKLGG 572 Query: 491 STWWTRRTKAEQEIQTAAKAXRR-------RRAPKLVAPGPAYERFVARFPYFTTVDQAK 543 W R+ K ++ + A R R AP L A Y+ F ARFPY T DQ Sbjct: 573 VAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPVLAAQDGVYDEFAARFPYDETEDQLN 632 Query: 544 AIRDVLDDLASGHPMDRVVCGDVGFGKTEVALRAAAAVALSGKQVAVVVPTTVLARQHVA 603 +I V DDL G PMDR+VCGDVGFGKTEVALRAA A++G QVAVVVPTT+LARQH Sbjct: 633 SIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVPTTLLARQHFK 692 Query: 604 TFRKRFAPLGIEVGSLSRATSSPEIKETKEGLRSGKMKVVVGTQAIASKDVKFAKLSLII 663 TF RF L I + SR S ++ TK+ + GK +VVGT A+ +KFA L L+I Sbjct: 693 TFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEGKTDIVVGTHALLGSSIKFANLGLLI 752 Query: 664 VDEEQHFGAAEKAKLSGLAKGAHTLWMSATPIPRTLAAGLAGFRELSVIASPPVHRLPVA 723 +DEEQHFG K +L L H L +SATPIPRTL L G RELS+I +PPV R+ V Sbjct: 753 IDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVR 812 Query: 724 TKIAPLSDAAIAAALLREQRRHGQSFLICPRIQDLDPMLARVQSMAPELRIVCLHGKLPA 783 T I+P I L+RE R GQSF +CPR+ DL + ++S PEL++ HG++PA Sbjct: 813 TFISPFDALVIRETLMREHYRGGQSFYVCPRVSDLPEIHDFLKSDVPELKVAVAHGQMPA 872 Query: 784 DELDDRMMSFVEGEADVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGG 843 EL+D M +F EG DVLL+T IVESGLD+P ANT++V + FGLAQL+QLRGRVGR Sbjct: 873 TELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSK 932 Query: 844 TRAFAYMLTESSSEQSG---KRLAVLEEFSRPGAGFAISERDLDLRGAGDLLSERQSGHV 900 RAFA + +G +RL VL+ GAGF ++ DLD+RGAG+LL E QSGH+ Sbjct: 933 VRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHI 992 Query: 901 QVFGPVLYSHLLKQA------SEKTNDRSADLWVPDLNLPLADLLPRSYVQSESVRLEIY 954 + G LY +L++A E+ +D W P +++ ++P YV ++RL +Y Sbjct: 993 KEVGFELYQQMLEEAVAELKGEEEIHDTG---WSPQISVGTPVMIPEEYVPDLNLRLGLY 1049 Query: 955 GRAARCWSEDDLEDLEEETSRRFGRLPSAGRDFFAAARLRIDCKRRGIVRLDVGPEAVAA 1014 R +++ E RFG LP+ + ++ C+ + +LD GP+ V Sbjct: 1050 RRLGELTDLKEIDGFGAELIDRFGPLPTEVQHLLKIVYVKSLCRTANVEKLDAGPKGVVV 1109 Query: 1015 TFLPGRLPKSKA 1026 F P A Sbjct: 1110 QFRNKEFPNPAA 1121 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 116/277 (41%), Gaps = 15/277 (5%) Query: 15 KKSKGSARSPISSSSPLGMLALHLLEQWKKSGRDGVVFLAESENRAERLGSVLHSLDPSL 74 +K + R P G AL +L + ++G L++ + A+ L VL + P + Sbjct: 10 RKILAATREITIGPVPTGAEAL-VLAELARAGAPVAYILSDGQKVAD-LEQVLGFVAPDI 67 Query: 75 EVLVFPRLNTLPFDGLEPSREIAGRRSSVLRRLA---RSKKPVFLVSTAEAIMERLPLPA 131 VL P + LP+D + PS + + RR + L L R P ++ T A ++R+ Sbjct: 68 PVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQRISPQD 127 Query: 132 SSARLSISLKVGAGYSEQELKDRLEALGYDLDEEADYPGSALFHGMTFEVFPAGALGPFR 191 L+ + + G +L RLE G++ G G +V+ G+ P R Sbjct: 128 VIESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLR 187 Query: 192 IEHSGGVIRRIAGVDPDEHDVVFDAEELHIDPMSERIALEGKRVQRAALPDYCQRAHWIA 251 ++ G + I DP + L ++PMSE ++L + + R +++ Sbjct: 188 LDFFGDTLEAIRSFDPASQRTIGQVRSLDLNPMSE-VSLTPETISHF-------RKQYLS 239 Query: 252 DAGVSGHADSWLSTIKEAAGRREAEREYLGPADWKRL 288 G + D+ + E GRR A E+ P + RL Sbjct: 240 LFGAATRDDALYQAVSE--GRRYAGMEHWLPLFYDRL 274