BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0114.0011.p (331 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 365 e-100 AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 364 e-100 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 358 8e-99 BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 357 3e-98 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 119 1e-26 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust. Identities = 167/331 (50%), Positives = 235/331 (70%), Gaps = 1/331 (0%) Query: 1 MVDADHQNKADIGAGIARRWYEQENVDVIVDFANSDVAFAVLELTKQKNKAMLVSSAGSS 60 +V ADHQNKADI A AR W +Q+ +D++V NS + A+ ++ +K + + AG++ Sbjct: 73 LVTADHQNKADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKRVFIGIGAGTA 132 Query: 61 DLTGKGCSANSVQWTYNTYALANSTVRALAKSGAKSWYFVTVDYAFGHALRNDAARTVEK 120 LT + C+ ++ + Y+T ALA T A+ K G KSW+F+T DYAFGH+L ND A V+ Sbjct: 133 RLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLENDTAAVVKA 192 Query: 121 VGGSIAGEVRHPLNSMDFSSYLLQAQSSKADVIAFANTGGDLANSIRQAQEFGMAHTQKL 180 GG++ G V+HPL++ DFSSYLLQAQ+SKA ++ AN GGD NSI+ A+EFG+ T K+ Sbjct: 193 NGGTVVGSVKHPLSASDFSSYLLQAQASKAQILGLANAGGDTINSIKAAKEFGITKTMKI 252 Query: 181 AAFLMQTSDIHAIGLQAAQGLQLATAFYWDLDDKTRDFAARFMARTKKRPTMVQAGLYSA 240 A LM +D+H++GLQ A+GL + ++YWD++D TR FA R+ ++ KK P+ +QA YSA Sbjct: 253 AGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDATRKFATRYFSKMKKMPSSLQAADYSA 312 Query: 241 VMNYLKAVEKSGTDDGPRVIAQMKDMPIDDFFARNAFVREDGQLIHDMYLVQVKSPAESK 300 V NY+KAV +GTDD +VIAQ+K ++DFF++ +R DG+ +HDMYL+QVK+PAESK Sbjct: 313 VSNYIKAVAAAGTDDPDKVIAQLKKTQLNDFFSKGT-IRADGRYVHDMYLMQVKTPAESK 371 Query: 301 GAWDYEKLVQVIPGKEAFATPEESACPLLKK 331 WDY K+V IPG +AF TP ES CPLLKK Sbjct: 372 KPWDYMKIVATIPGDQAFTTPAESKCPLLKK 402 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust. Identities = 170/332 (51%), Positives = 229/332 (68%), Gaps = 1/332 (0%) Query: 1 MVDADHQNKADIGAGIARRWYEQENVDVIVDFANSDVAFAVLELTKQKNKAMLVSSAGSS 60 +V ADHQNKAD+ + IAR+WY+ E VD I++ +S V AV L+K K K + + A ++ Sbjct: 71 VVTADHQNKADVASNIARQWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITVNTGAATT 130 Query: 61 DLTGKGCSANSVQWTYNTYALANSTVRALAKSGAKSWYFVTVDYAFGHALRNDAARTVEK 120 +LTGK CS W Y+TY+LA T AL K G SW+F+T DYAFG++L + + V+ Sbjct: 131 ELTGKQCSPYGFHWAYDTYSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTSNFVKA 190 Query: 121 VGGSIAGEVRHPLNSMDFSSYLLQAQSSKADVIAFANTGGDLANSIRQAQEFGM-AHTQK 179 GG + G VRHPL + D+SS+LLQAQSS A VI AN G D +N+I+QA EFG+ A Q+ Sbjct: 191 NGGKVLGSVRHPLATTDYSSFLLQAQSSGAKVIGLANAGLDTSNAIKQASEFGIVAGGQR 250 Query: 180 LAAFLMQTSDIHAIGLQAAQGLQLATAFYWDLDDKTRDFAARFMARTKKRPTMVQAGLYS 239 LAA L +++H +GL+AAQGL L FYWD DD++R F RF RT P M+ G YS Sbjct: 251 LAALLFTLAEVHGLGLEAAQGLTLTEGFYWDRDDESRKFGERFKERTGAMPNMIHTGTYS 310 Query: 240 AVMNYLKAVEKSGTDDGPRVIAQMKDMPIDDFFARNAFVREDGQLIHDMYLVQVKSPAES 299 AV++YLKA+EK+GTDD V MK+MP++D FA++ V +G++IHDMYL++VK P ES Sbjct: 311 AVLHYLKAIEKAGTDDADAVAKAMKEMPVNDVFAKDGHVAANGRMIHDMYLMEVKKPDES 370 Query: 300 KGAWDYEKLVQVIPGKEAFATPEESACPLLKK 331 K WDY K++ IPGKEAF P +S CPL+K+ Sbjct: 371 KQPWDYYKVLATIPGKEAFMDPTKSGCPLVKQ 402 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 358 bits (919), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 168/331 (50%), Positives = 227/331 (68%), Gaps = 1/331 (0%) Query: 1 MVDADHQNKADIGAGIARRWYEQENVDVIVDFANSDVAFAVLELTKQKNKAMLVSSAGSS 60 +V ADHQNK DI + IAR+WY+ E VD I++ S VA AV ++K+K K +V+ A ++ Sbjct: 70 VVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISKEKKKIDIVTGAATT 129 Query: 61 DLTGKGCSANSVQWTYNTYALANSTVRALAKSGAKSWYFVTVDYAFGHALRNDAARTVEK 120 +LTGK CS W Y+T++LA T AL K G SW+F+T DYAFG++L + V++ Sbjct: 130 ELTGKQCSPYGFHWAYDTHSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTGNYVKE 189 Query: 121 VGGSIAGEVRHPLNSMDFSSYLLQAQSSKADVIAFANTGGDLANSIRQAQEFGMAH-TQK 179 GG++ G VRHPL + DFSS+LLQAQSS A VI AN G D +N+I+QA EFG+ Q+ Sbjct: 190 NGGTVVGAVRHPLATTDFSSFLLQAQSSGAKVIGLANAGLDTSNAIKQAAEFGIVQGGQR 249 Query: 180 LAAFLMQTSDIHAIGLQAAQGLQLATAFYWDLDDKTRDFAARFMARTKKRPTMVQAGLYS 239 LAA L +++H +GL AAQGL L FYW+ D+++ F RFM RT K P MV AG YS Sbjct: 250 LAALLFTLAEVHGLGLDAAQGLTLTEGFYWNRDEESAKFGKRFMERTGKMPNMVHAGTYS 309 Query: 240 AVMNYLKAVEKSGTDDGPRVIAQMKDMPIDDFFARNAFVREDGQLIHDMYLVQVKSPAES 299 AV+ YLKA+EK+GTD+ V ++ +P+DD FA+N V +G++IHDMYL++VK P ES Sbjct: 310 AVLQYLKAIEKAGTDETEAVAKELHALPVDDVFAKNGTVAPNGRMIHDMYLLEVKKPDES 369 Query: 300 KGAWDYEKLVQVIPGKEAFATPEESACPLLK 330 K WDY K++ IPGKEAF P +S C L+K Sbjct: 370 KEPWDYFKVLATIPGKEAFIDPAQSGCELVK 400 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 357 bits (915), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 161/332 (48%), Positives = 230/332 (69%), Gaps = 1/332 (0%) Query: 1 MVDADHQNKADIGAGIARRWYEQENVDVIVDFANSDVAFAVLELTKQKNKAMLVSSAGSS 60 ++ ADHQNK D+ + IAR+WY+ E VD I++ S V AV L+K+K K + + A +S Sbjct: 70 IITADHQNKPDVASNIARQWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATS 129 Query: 61 DLTGKGCSANSVQWTYNTYALANSTVRALAKSGAKSWYFVTVDYAFGHALRNDAARTVEK 120 +LTGK C+ W Y+T+ALA T +L + G +WYF+T DYAFG++L + VE Sbjct: 130 ELTGKQCTPYGFHWAYDTHALAVGTGGSLVQQGGDTWYFLTADYAFGYSLEEQTTKFVES 189 Query: 121 VGGSIAGEVRHPLNSMDFSSYLLQAQSSKADVIAFANTGGDLANSIRQAQEFGM-AHTQK 179 GG + G VRHPL++ D+SS+LLQAQ+S A V+ AN G D +N+I+QA EFG+ A Q+ Sbjct: 190 KGGKVLGSVRHPLSTTDYSSFLLQAQASGAKVVGLANAGLDTSNAIKQAAEFGIVAGGQR 249 Query: 180 LAAFLMQTSDIHAIGLQAAQGLQLATAFYWDLDDKTRDFAARFMARTKKRPTMVQAGLYS 239 LAA L +++H +GL+AAQGL L FYWD DD++R F RF RT + P M+QAG YS Sbjct: 250 LAALLFTLAEVHGLGLEAAQGLTLTEGFYWDRDDESRAFGKRFFDRTGRMPNMIQAGTYS 309 Query: 240 AVMNYLKAVEKSGTDDGPRVIAQMKDMPIDDFFARNAFVREDGQLIHDMYLVQVKSPAES 299 AV+ YLKA++++GTD+ V ++ +MP++D FAR+ V +G++I+DMYL++VK P ES Sbjct: 310 AVLQYLKAIKEAGTDETEAVAKKLHEMPVEDVFARHGKVGPNGRMIYDMYLMEVKKPEES 369 Query: 300 KGAWDYEKLVQVIPGKEAFATPEESACPLLKK 331 K WDY K++ IPG +A+ PEES CPL+K+ Sbjct: 370 KAPWDYYKVLATIPGDQAYMKPEESGCPLVKQ 401 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 108/201 (53%), Gaps = 3/201 (1%) Query: 11 DIGAGI--ARRWYEQENVDVIVDFANSDVAFAVLELTKQKNKAMLVSSAGSSDLTGKGCS 68 D+G G+ AR+ E++ V ++ NS +A A+ +++ +K +VS + +TG C Sbjct: 91 DVGTGVQKARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCK 150 Query: 69 ANSVQWTYNTYALANSTVRALAKSGAKSWYFVTVDYAFGHALRNDAARTVEKVGGSIAGE 128 N + T AN+ L K W+F+T DYAFGH L+ AA ++K+GG+I G Sbjct: 151 WNVYRVCNTTSMEANAVANLLFSKYGKKWHFITPDYAFGHTLQKAAAADLQKLGGTITGN 210 Query: 129 VRHPLNSMDFSSYLLQAQSSKADVIAFANTGGDLANSIRQAQEFGMAHTQKLAAFLMQTS 188 PL + DFS+YL++A+++ DV+ G D+ N ++Q +FG+ +A + Sbjct: 211 ELTPLGTTDFSAYLIKARAANPDVLLVLPQGSDMVNCLKQIAQFGIGKQMHIAGLQQELE 270 Query: 189 DIHAIGLQAAQGLQLATAFYW 209 + A+ +A G+ + +YW Sbjct: 271 SLEAMPPEARVGIWM-FEWYW 290