BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0114.0010.p         (68 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport...    64   1e-10

>RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems,
          periplasmic component Rso Ralstonia solanacearum
          Length = 402

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 39/52 (75%)

Query: 17 VAFAAAPSHAQISDDAVKIGVLTDQAGLYADAAGPGAVEAVRMAIADFGGKV 68
          +  AA+ +HAQ+S D VKIG +TD +GLYAD  G G VEAV+MAI D GGKV
Sbjct: 15 LGLAASGAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDEGGKV 66