BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0106.p         (147 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC0396 Non COG                                                         66   2e-11
RSc1821 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...    59   3e-09

>CC0396 Non COG
          Length = 147

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 1/136 (0%)

Query: 8   NSPITEHLAYLLAQANREINRQLETRLAKEG-VPVEQWRILKVLSDGNGHSMGELADAVL 66
           ++P    L +LL   +R + R +E R+A EG +   Q  +L  L + +G  +GE ADA+ 
Sbjct: 2   STPPNRRLVFLLNAGHRRVQRWIEGRMAAEGGLTAAQSGVLFFLGERDGALIGEAADALD 61

Query: 67  LNHPTLTKMIDRMVSDALVYRVQDPKDRRKVLMFVSDRGKALCRRLNSLAVSQEEHIVES 126
           L    +T +IDRM    LV R  D KD R + + ++D+G+A      +        + E 
Sbjct: 62  LAPSAMTGLIDRMARAELVERRADAKDGRAMHLHLTDKGRAARDTAKAGLRGVNAQLTEG 121

Query: 127 YGDKSTTELKRLLESL 142
           + D+  + + R L SL
Sbjct: 122 FTDEEISVVSRWLASL 137


>RSc1821 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 147

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 66/134 (49%)

Query: 11  ITEHLAYLLAQANREINRQLETRLAKEGVPVEQWRILKVLSDGNGHSMGELADAVLLNHP 70
           + ++L  LL +A   ++ Q    + + G+ V +WR+L  L+     S+  LA+  +   P
Sbjct: 8   VDDYLPALLGRAWHLVSTQFHAVVEQHGLSVLEWRVLSTLASNGPMSISVLAEKAVSKQP 67

Query: 71  TLTKMIDRMVSDALVYRVQDPKDRRKVLMFVSDRGKALCRRLNSLAVSQEEHIVESYGDK 130
           T+T+++ R+ +   V R     DRR  L+ V+  G+ L   L +LA   E  I+E    +
Sbjct: 68  TVTRLLLRLEAQGHVERSTSRDDRRYTLVRVTRNGRRLVSGLIALAEEHERAILEPMSQQ 127

Query: 131 STTELKRLLESLIG 144
               LK +L  LI 
Sbjct: 128 KIDTLKDILHELIS 141