BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0087.p         (96 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3321 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...    61   6e-10

>PA3321 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 304

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%)

Query: 2   IDALLARHGLKRRVAVTLAHVVAVPFAVAGTDLIATMAERVARRFTHLADIAVVAPPIDI 61
           +D+ L + GL+R+VA+TL H    P  +AGTDL+ T+AER   R     ++A+  PP+ I
Sbjct: 212 VDSALEKRGLRRQVALTLPHFTVAPALLAGTDLVLTIAERTLERLRLPEELALCEPPLAI 271

Query: 62  PAFAIDLIHPSRAARDPALRWFLDAVDRCAGRL 94
           P F    I    A R+ A  W  + +   A ++
Sbjct: 272 PRFDYVQIWRGDAEREAAGAWLREQIQAAARKI 304