BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0027.p         (79 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Rv3089 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ...    83   2e-16
MT3174 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ...    83   2e-16
DR0336 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ...    74   6e-14
mlr1843 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid...    71   5e-13
BH3103 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ...    69   2e-12

>Rv3089 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
           Mtu Mycobacterium tuberculosis H37Rv
          Length = 503

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 1   VREVAVIGLPDARWGEKPVAIVVLADDAKLDLPGLTDHCRTRLAGFKVPRQLVIRDSLPR 60
           V EVAVIGLPD +WGE   AIVV AD  ++    + ++C TRLA +K+P++++  +++PR
Sbjct: 424 VSEVAVIGLPDEKWGEIAAAIVV-ADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPR 482

Query: 61  NPSGKVLKRVLRAELEAT 78
           NP+GK+LK VLR +  AT
Sbjct: 483 NPTGKILKTVLREQYSAT 500


>MT3174 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
           MtC Mycobacterium tuberculosis CDC1551
          Length = 503

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 1   VREVAVIGLPDARWGEKPVAIVVLADDAKLDLPGLTDHCRTRLAGFKVPRQLVIRDSLPR 60
           V EVAVIGLPD +WGE   AIVV AD  ++    + ++C TRLA +K+P++++  +++PR
Sbjct: 424 VSEVAVIGLPDEKWGEIAAAIVV-ADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPR 482

Query: 61  NPSGKVLKRVLRAELEAT 78
           NP+GK+LK VLR +  AT
Sbjct: 483 NPTGKILKTVLREQYSAT 500


>DR0336 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
           Dra Deinococcus radiodurans
          Length = 524

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 44/75 (58%)

Query: 1   VREVAVIGLPDARWGEKPVAIVVLADDAKLDLPGLTDHCRTRLAGFKVPRQLVIRDSLPR 60
           VRE  V+ +P  +WGE P A + L    ++    LT H R  LAGFKVP+    RD LP+
Sbjct: 441 VREAVVVAMPHEKWGEVPCAFIALHQGQEVTPEDLTAHVREHLAGFKVPKHYEFRDDLPK 500

Query: 61  NPSGKVLKRVLRAEL 75
             SGK  K +LRAEL
Sbjct: 501 TASGKFQKFILRAEL 515


>mlr1843 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
           Mlo Mesorhizobium loti
          Length = 495

 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 47/73 (64%)

Query: 1   VREVAVIGLPDARWGEKPVAIVVLADDAKLDLPGLTDHCRTRLAGFKVPRQLVIRDSLPR 60
           + E AVIG+ DARWGE   A VV+     +D   L  HC  R+A FKVP++ ++ D+LPR
Sbjct: 414 IAEAAVIGIADARWGEVGRAFVVVKPGCAVDPADLASHCGARIARFKVPKEFLLTDALPR 473

Query: 61  NPSGKVLKRVLRA 73
             SGK+ K +LR+
Sbjct: 474 TASGKIQKHILRS 486


>BH3103 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
           Bha Bacillus halodurans
          Length = 564

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/74 (47%), Positives = 45/74 (60%)

Query: 1   VREVAVIGLPDARWGEKPVAIVVLADDAKLDLPGLTDHCRTRLAGFKVPRQLVIRDSLPR 60
           V+E  VIG+PD   GE   A +V+ +   +    L D+CRT LA +KVPR+   RD LP+
Sbjct: 480 VQEAVVIGVPDEYRGETVKAFIVVKEGESVSEKELNDYCRTHLAAYKVPRKYEFRDDLPK 539

Query: 61  NPSGKVLKRVLRAE 74
              GKVLKRVL  E
Sbjct: 540 TMVGKVLKRVLIEE 553