BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0021.p         (181 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr9742 Non COG                                                       155   4e-38
mlr6188 Non COG                                                       118   9e-27
RSc2602 [OU] COG4959 Type IV secretory pathway, protease TraF Rs...    93   3e-19

>mlr9742 Non COG
          Length = 181

 Score =  155 bits (393), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 97/155 (62%)

Query: 27  PRLIWNATASTPIGLYALHPLGELRDLELVAVRLPEPIASFLADGGFLPKGLPLLKRVMA 86
           P L+WNA+AS P+GLYA+  +       LV V  P+ +A F A+ G+LP G+P+LK +  
Sbjct: 27  PLLLWNASASAPLGLYAIRKMAVPTAGALVVVEPPDKVARFAAERGYLPLGVPMLKHIEG 86

Query: 87  LPGQTVCRSGDAITVDAVDVGAAHEHDHRGRPLPRWSGCHTLEPGEVFLMNPTVPDSLDG 146
           LPGQ VCR    ITV  + VG A E D +GR LP W GC  +   E+F++N  V DSLDG
Sbjct: 87  LPGQPVCRLSRLITVTGLAVGVALERDRKGRALPDWQGCRVIAATEIFVLNRKVEDSLDG 146

Query: 147 RYFGALPVSSIVARAVPLWTDEAADGRFVWRAATH 181
           RYFG  P SSIV  A PLWTDE  DG + W A  +
Sbjct: 147 RYFGPFPASSIVGAARPLWTDERGDGHYTWLAPAN 181


>mlr6188 Non COG
          Length = 182

 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 1/152 (0%)

Query: 16  VAGALALVHPAPRLIWNATASTPIGLYALHPLGELRDLELVAVRLPEPIASFLADGGFLP 75
           + G  AL  P+P L+WNA+AS P+GLY +      R  +LV  R P  +A      G+LP
Sbjct: 32  LTGFTALPKPSPLLVWNASASAPVGLYRVGSGTPARG-DLVLARPPGFVAYLADQRGYLP 90

Query: 76  KGLPLLKRVMALPGQTVCRSGDAITVDAVDVGAAHEHDHRGRPLPRWSGCHTLEPGEVFL 135
           + +PL+KR+ ALP + VC   +AI +    V    + D +GRPLP W+GC  L   EVFL
Sbjct: 91  RNIPLVKRLAALPDEHVCAFSNAIIIGGEIVARRLKIDTQGRPLPWWNGCRALAHDEVFL 150

Query: 136 MNPTVPDSLDGRYFGALPVSSIVARAVPLWTD 167
           +      S D RYFG +P  +I+ R VPLWT+
Sbjct: 151 LGNEKNHSFDSRYFGPVPAENIIGRLVPLWTE 182


>RSc2602 [OU] COG4959 Type IV secretory pathway, protease TraF Rso Ralstonia
           solanacearum
          Length = 199

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 8/155 (5%)

Query: 21  ALVHPAPRLIWNATASTPIGLYALHPLGE--------LRDLELVAVRLPEPIASFLADGG 72
           A V P PRL +N + S  +G Y + P           L    +V V LP   A+  A  G
Sbjct: 42  AFVSPLPRLTYNPSDSVAVGWYRIDPFDSRTASLPRPLSVDSIVLVPLPATAATLAAQRG 101

Query: 73  FLPKGLPLLKRVMALPGQTVCRSGDAITVDAVDVGAAHEHDHRGRPLPRWSGCHTLEPGE 132
           +LP  +PLLKRV A+  Q VC     + +D V   A    D  GRPLP    C  LEPGE
Sbjct: 102 YLPTHIPLLKRVGAVAPQHVCIVAGQVRIDGVPSAAVLPADRLGRPLPSLQLCRRLEPGE 161

Query: 133 VFLMNPTVPDSLDGRYFGALPVSSIVARAVPLWTD 167
           ++L++ T P S D RYFG +  S+++  A P+W +
Sbjct: 162 LYLLSVTNPASFDSRYFGPVSASAVIGIARPIWLE 196