BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0111.0009.p         (159 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa1052 [R] COG2391 Predicted transporter component Sme Sinorhiz...   115   4e-26
RSc0437 [R] COG2391 Predicted transporter component Rso Ralstoni...   112   2e-25
BMEII0808 [R] COG2391 Predicted transporter component Bme Brucel...   110   1e-24
msr8615 Non COG                                                       110   1e-24
VCA0640 [R] COG2391 Predicted transporter component Vch Vibrio c...   105   3e-23

>SMa1052 [R] COG2391 Predicted transporter component Sme Sinorhizobium
           meliloti
          Length = 143

 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 86/132 (65%), Gaps = 6/132 (4%)

Query: 10  GLIFGAGLLISGMTDPQKVLGFLDLFGAWDATLAFVMAGAVAVAATGFAIARRRTTPAFX 69
           G++FG GL +SGM +P +V GFL++FG WD +LAFV+ GAV VA  G  + +    PAF 
Sbjct: 15  GIVFGFGLSLSGMLNPARVQGFLEVFGTWDPSLAFVLGGAVVVAFIGVQVMKLMRHPAFD 74

Query: 70  ARFLWPDRNDIDAPLVAGAVLFGIGWGLVGICPGPALVNLAGLSLP-IVVYVVAMLAGMI 128
             F  P    IDAPLV G+ +FG+GWG+ G CPGPA+ +LA L LP  V++VVAML GM 
Sbjct: 75  DTFHVPTIRRIDAPLVIGSAVFGLGWGIGGFCPGPAVASLA-LGLPQTVLFVVAMLVGMT 133

Query: 129 GQNLFGRNLWRR 140
             +     LW R
Sbjct: 134 LHD----RLWSR 141


>RSc0437 [R] COG2391 Predicted transporter component Rso Ralstonia
           solanacearum
          Length = 137

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 80/127 (62%)

Query: 1   MAPLVSFICGLIFGAGLLISGMTDPQKVLGFLDLFGAWDATLAFVMAGAVAVAATGFAIA 60
           MA L+++  GL+FGAGL++S M  P KVLGFLDL G WD +LAFVMAGA+ V A  F IA
Sbjct: 1   MAVLIAWAAGLLFGAGLMVSCMASPAKVLGFLDLAGRWDPSLAFVMAGAILVGAIAFFIA 60

Query: 61  RRRTTPAFXARFLWPDRNDIDAPLVAGAVLFGIGWGLVGICPGPALVNLAGLSLPIVVYV 120
           RRR           P    I A LV G+  FGIGWGL G CPGPALV L   +     +V
Sbjct: 61  RRRGRSLLGLPVRLPAGAAITARLVLGSAAFGIGWGLAGFCPGPALVALGAGAPKAWGFV 120

Query: 121 VAMLAGM 127
            AMLAGM
Sbjct: 121 AAMLAGM 127


>BMEII0808 [R] COG2391 Predicted transporter component Bme Brucella melitensis
          Length = 218

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 82/121 (67%), Gaps = 3/121 (2%)

Query: 10  GLIFGAGLLISGMTDPQKVLGFLDL-FGAWDATLAFVMAGAVAVAATGFAIARRRTTPAF 68
           G+IFG GL +SGM +P +V+GFL++  G WD +LAFVM G + V   G A+ RR + PAF
Sbjct: 89  GVIFGFGLSLSGMINPARVIGFLNIASGHWDPSLAFVMGGGLLVTIPGIALCRRLSAPAF 148

Query: 69  XARFLWPDRNDIDAPLVAGAVLFGIGWGLVGICPGPALVNLAGLSLP-IVVYVVAMLAGM 127
              F  P +  ID  L+AG+ LFGIGWGL G CPGPA+  L+ L LP + ++V+AM  GM
Sbjct: 149 DTAFHLPTKTQIDRRLIAGSALFGIGWGLGGFCPGPAVAALS-LGLPQVALFVLAMAVGM 207

Query: 128 I 128
           I
Sbjct: 208 I 208


>msr8615 Non COG
          Length = 285

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/133 (50%), Positives = 90/133 (67%)

Query: 1   MAPLVSFICGLIFGAGLLISGMTDPQKVLGFLDLFGAWDATLAFVMAGAVAVAATGFAIA 60
           + P+ +   G +FG GL +SGM DP +V GFLD+FGAWD +LAFV+ GAVAVA  G A  
Sbjct: 147 LQPVAALAAGTLFGLGLALSGMLDPVRVQGFLDVFGAWDPSLAFVLGGAVAVAMGGMAWL 206

Query: 61  RRRTTPAFXARFLWPDRNDIDAPLVAGAVLFGIGWGLVGICPGPALVNLAGLSLPIVVYV 120
           RR + P    RF  P ++ IDA L+ G+ +FG+GWGL G CPGPAL +L+   +P +V+V
Sbjct: 207 RRMSRPLLADRFHLPMKSRIDARLIVGSAIFGLGWGLGGFCPGPALASLSLGLMPTLVFV 266

Query: 121 VAMLAGMIGQNLF 133
             MLAGM+  + F
Sbjct: 267 AFMLAGMVAHDRF 279


>VCA0640 [R] COG2391 Predicted transporter component Vch Vibrio cholerae
          Length = 154

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 1/129 (0%)

Query: 6   SFICGLIFGAGLLISGMTDPQKVLGFLDLFGAWDATLAFVMAGAVAVAATG-FAIARRRT 64
           S + GL+FG G+++SGM DP KV+GFLD+ G WD +L FVM GA+A+     F + + + 
Sbjct: 12  SLVAGLLFGLGMVVSGMADPAKVIGFLDVAGTWDPSLMFVMGGALAIFMPAYFFLIKPKA 71

Query: 65  TPAFXARFLWPDRNDIDAPLVAGAVLFGIGWGLVGICPGPALVNLAGLSLPIVVYVVAML 124
            P     F   +   ID  L++G+V+FG+GWGLVGICPGP + +LA  +L   V+  AM+
Sbjct: 72  KPVNAEVFCLANNTKIDRRLISGSVIFGLGWGLVGICPGPVVSSLALGNLGAWVFFPAMM 131

Query: 125 AGMIGQNLF 133
            G+   NL 
Sbjct: 132 VGLGTTNLL 140