BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0111.0008.p         (131 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1246 [J] COG0251 Putative translation initiation inhibitor, y...    94   8e-20
SPy0145 [J] COG0251 Putative translation initiation inhibitor, y...    68   5e-12
PAB0825 [J] COG0251 Putative translation initiation inhibitor, y...    68   5e-12
CC2796 Non COG                                                         66   2e-11
Cgl0152 [J] COG0251 Putative translation initiation inhibitor, y...    66   2e-11

>RSp1246 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Rso Ralstonia solanacearum
          Length = 158

 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 67/111 (60%), Gaps = 2/111 (1%)

Query: 20  PLSFGARVGDLLFISGIPGFDANRELP-DGFEAQFANVVTNFKRVLNEAGATMRDLVKVN 78
           PL+   +VG+LLF+SGIP FD + +L  + F AQ   V+ N   +L  AG     +VKVN
Sbjct: 48  PLTPAVKVGNLLFVSGIPAFDKHGKLAVNDFTAQMNQVMENITGILKAAGIGWDRVVKVN 107

Query: 79  VLLTRASDVATMNALYAGAFGPAPYPARTTCVVMALPNPKMLIEIEGVASV 129
           V L R  D   MN +YA  F    YPARTT V  ALPNP  L+EIE VA++
Sbjct: 108 VFLARREDFKEMNRIYAAHFQAGRYPARTTAVT-ALPNPDFLLEIECVAAL 157


>SPy0145 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Spy Streptococcus pyogenes M1 GAS
          Length = 121

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 7/125 (5%)

Query: 7   IKHFPPPPGIQAPPLSFGARVGDLLFISG-IPGFDANRELPDGFEAQFANVVTNFKRVLN 65
           +K +P P G    P S     G  L+ +G +P      +L DGFEAQ   V  N + +L 
Sbjct: 1   MKSYPEPMG----PYSTYTIEGHFLYTAGQLPLNPVTGQLSDGFEAQCRQVFVNLQSILA 56

Query: 66  EAGATMRDLVKVNVLLTRASDVATMNALYAGAFGPAPYPARTTCVVMALPNPKMLIEIEG 125
           E    +  + K+NV LT  ++V  +N +    F   PYP RT   V ALP  + LIE+E 
Sbjct: 57  EQKLDLNHIYKLNVYLTDVTNVEILNHVMTDLF-EEPYPVRTAVQVSALP-LQALIEVEA 114

Query: 126 VASVK 130
           VA VK
Sbjct: 115 VARVK 119


>PAB0825 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Pab Pyrococcus abyssi
          Length = 127

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 8/119 (6%)

Query: 11  PPPPGIQAPPLSFGARVGDLLFISG-IPGFDANRELPDG-FEAQFANVVTNFKRVLNEAG 68
           P P G    P S   +VG+ +F++G IP      E+  G  + Q   V+ N K +L EAG
Sbjct: 12  PKPIG----PYSQAIKVGNFIFVAGQIPIDPETGEIVKGDIKEQTKRVIENIKAILEEAG 67

Query: 69  ATMRDLVKVNVLLTRASDVATMNALYAGAFGPAPYPARTTCVVMALPNPKMLIEIEGVA 127
           A++ D+VKV V L   +D A MN +Y+  FG +  PAR    V  LP   +LIE+E +A
Sbjct: 68  ASLNDVVKVTVYLKDLNDFAKMNEVYSEYFGESK-PARVAVEVSRLPKD-VLIEMEAIA 124


>CC2796 Non COG
          Length = 129

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 13  PPGIQAP--PLSFGARVGDLLFISGIPGFDA--NRELPDGFEAQFANVVTNFKRVLNEAG 68
           PPG Q P  P S G     ++++SG   FD   N   P   EAQ   V+   K V+  AG
Sbjct: 8   PPGTQTPIAPFSPGTLADGIVYVSGTLAFDKDNNVAFPGDAEAQTRQVLETIKSVIETAG 67

Query: 69  ATMRDLVKVNVLLTRASDVATMNALYAGAFGPAPYPARTTCVVMALPNPKMLIEIEGVAS 128
            TM D+   ++ LT     A MN +YA  F P   PAR  C+   L  P  ++EI  VA 
Sbjct: 68  GTMEDVTMNHIFLTDWVHYAPMNKVYAEYF-PGDKPAR-YCIQCGLVKPGFVVEIASVAH 125

Query: 129 V 129
           +
Sbjct: 126 I 126


>Cgl0152 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Cgl Corynebacterium glutamicum
          Length = 131

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 9   HFPPPPGIQAPPLSFGARVGDLLFISGIPGFDANREL--PDGFEAQFANVVTNFKRVLNE 66
             PP P  +    S+G R GD L ISG+  FD++  +      EAQ   V  N + V+ E
Sbjct: 4   QLPPGPA-ERTVYSYGVRAGDQLHISGMVAFDSDANIVGEGDIEAQAEQVFKNLQAVVEE 62

Query: 67  AGATMRDLVKVNVLLTRASDVATMNALYAGAFGPAPYPARTTCVVMALPNPKMLIEIEGV 126
           AG T+ ++V     L   +D   +NA  +  F     P  T   V AL  P+ L+EI  V
Sbjct: 63  AGGTINNIVSTTTYLADVTDAPVVNAARSRYFTGEVLPTHTVIGVAALARPQFLVEISAV 122

Query: 127 A 127
           A
Sbjct: 123 A 123