BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0045.p         (241 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa0151 [G] COG1593 TRAP-type C4-dicarboxylate transport system,...   179   7e-45

>SMa0151 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large
           permease component Sme Sinorhizobium meliloti
          Length = 866

 Score =  179 bits (453), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 122/192 (63%), Gaps = 12/192 (6%)

Query: 1   VLEKLIAYEAVHEIKGWDDLRRRLAP-DRRCFAFFHPALPGEPLIFVEVALVQGLATAVP 59
           +LEK+I YEAVH I GWD+LRRRLAP DRRCFAFFHP L  +PLIFVEVAL + +    P
Sbjct: 572 ILEKIIRYEAVHHIGGWDELRRRLAPEDRRCFAFFHPQLVDDPLIFVEVALTREM----P 627

Query: 60  PLLVQDADQDSAGLRAAHADTAIFYSISNCQDGLRGVSFGNFLIKQVVEELQTEFPQLKR 119
           P +     +D A +RA  A TA+FYSISNCQ+GLRG+SFGNFLIKQVVE+L+ + P+L  
Sbjct: 628 PNIADLLKEDRAPIRATDATTAVFYSISNCQEGLRGISFGNFLIKQVVEDLRRDLPRLDT 687

Query: 120 FSTLSPIPGFRRWLGQQPQSGGNEV------AMLRELHREGWWHDAAPCETWRPVLMRLC 173
           F TLSP+PGF  WL ++ Q+  +        + L  L    W          +P L    
Sbjct: 688 FVTLSPVPGFADWLSRERQAETSNALSAADRSRLAALDEPDWADQPEIAAAIQPSLTAAA 747

Query: 174 A-HISRARRRPG 184
           A +  RAR R G
Sbjct: 748 AWYFLRARNRNG 759