BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0110.0042.p (286 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll6783 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 195 8e-50 PA3995 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 182 1e-45 PA2846 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 177 3e-44 PA2497 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 174 3e-43 RSc0615 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 173 5e-43 >mll6783 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 282 Score = 195 bits (496), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 127/281 (45%), Positives = 160/281 (56%), Gaps = 2/281 (0%) Query: 1 MLDLELLRAFVAVADCGGFHRAAEQLHLTQSTISQQIKRLELETRRPLFRRTTRSVALTD 60 MLDL LR+FV V G F AAE+L L QST+SQ I +LE R L R T V LT Sbjct: 1 MLDLVQLRSFVTVQQMGSFTFAAERLGLGQSTVSQHIGKLEAALGRQLLARDTHKVVLTP 60 Query: 61 EGEMLLGDARRLLQLEEAARQRLVAPRLSGAVRLGVVEEVAGGSLPSALGRFAALHRGVK 120 +GE LLG AR LL +E + A RL G +RLGV E++ LP L F H V Sbjct: 61 DGEALLGHARTLLSIEGQVQALFTAQRLRGTLRLGVSEDLVTSRLPLVLEDFVRSHPSVD 120 Query: 121 LEVQIGVSAELIEQLDAGRLDLVFAKRPLGTSKGRLVWREPLVWTAADTFDLVPGAPLPL 180 LE+ + +S L + D G LDLV AKR LG S+GRLV+REPLVW A D ++ A LPL Sbjct: 121 LELTVALSGVLYQMQDNGELDLVLAKRRLGDSRGRLVYREPLVWLARDPEHVLSLAALPL 180 Query: 181 ALYRERSVSRDAALSALRDGELGWEIVYTSPSLTGVRAAAVAGLAVTPLPLSAVTTGLRI 240 + SV+R AL L + W IV T SL+G+ AAA AG+ V P S GL+ Sbjct: 181 IAFPAPSVTRSIALEVLERHRMPWRIVCTCGSLSGLTAAARAGMGVLVQPQSMSPPGLKE 240 Query: 241 LGIGDGLPPLPDLEFAIYEKRRPDKA-AEALADALLTLARG 280 + G LPPL D+EF + + D+A AL++ +LT RG Sbjct: 241 ISSGR-LPPLEDVEFVLIPSKSADRALVSALSEDILTKVRG 280 >PA3995 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 297 Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/280 (42%), Positives = 161/280 (57%), Gaps = 4/280 (1%) Query: 2 LDLELLRAFVAVADCGGFHRAAEQLHLTQSTISQQIKRLELETRRPLFRRTTRSVALTDE 61 LD+ LLR F+ V D GGF AA+ L LT S +S IKRLE L RTTR + LT Sbjct: 11 LDIVLLRTFLEVVDSGGFALAADNLALTPSAVSGHIKRLEQTAGVSLLSRTTRRLELTQA 70 Query: 62 GEMLLGDARRLLQLEEAARQRLVAPRLSGAVRLGVVEEVAGGSLPSALGRFAALHRGVKL 121 GE L AR +++LE AR RL + +R+G E+ A LP L RF H + Sbjct: 71 GETLYAYARNIVELEREARARLHGTPIRDRLRIGASEDFASAWLPRVLQRFRRWHPEASI 130 Query: 122 EVQIGVSAELIEQLDAGRLDLVFAK--RPLGTSKGRLVWREPLVWTAADTFDLVPGAPLP 179 E+++G++ +L+ Q GR D+VF K R +G G L+W EPLVW AA +L G PLP Sbjct: 131 ELKVGITTDLLRQQAQGRTDVVFGKQCRRVG-DDGELLWEEPLVWAAATAIELPAGEPLP 189 Query: 180 LALYRERSVSRDAALSALRDGELGWEIVYTSPSLTGVRAAAVAGLAVTPLPLSAVTTGLR 239 LAL+ E V R+AA++AL W +V+ S S+ G +AA+AG AVT + S + GLR Sbjct: 190 LALFPEPCVYREAAITALGAAARPWRLVFESASMAGCLSAALAGFAVTVVARSQMREGLR 249 Query: 240 ILGIGDGLPPLPDLEFAIYEKRRPDKAAEALADALLTLAR 279 LG G P LP+ F + R+P AA+AL +A+ L + Sbjct: 250 ELGPEQGFPTLPEARFYAF-SRQPSLAADALIEAVRQLGQ 288 >PA2846 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 284 Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 110/251 (43%), Positives = 147/251 (58%), Gaps = 4/251 (1%) Query: 2 LDLELLRAFVAVADCGGFHRAAEQLHLTQSTISQQIKRLELET-RRPLFRRTTRSVALTD 60 +D ELLR FVA+A+ GGF RAAE L+ TQS +S Q+KRLE + +R LF R R LT Sbjct: 7 IDTELLRTFVAIAEHGGFTRAAEALNRTQSAVSMQMKRLEEDVLQRSLFERDGRQTRLTA 66 Query: 61 EGEMLLGDARRLLQLEEAARQRLVAPRLSGAVRLGVVEEVAGGSLPSALGRFAALHRGVK 120 EG++LLG ARR+L+L L P + G+VR+G ++ LP+ L RFA + V+ Sbjct: 67 EGQVLLGYARRILKLHGEVFNTLRRPHMVGSVRIGTPDDYVMRFLPAILSRFAEAYPLVQ 126 Query: 121 LEVQIGVSAELIEQLDAGRLDLVFAKRPLGTSKGRLVWREPLVWTAADTFDLVPGAPLPL 180 +EV S L+ + D LDL R GT G+L+ +EP VW AA+ F P+PL Sbjct: 127 VEVHCDTSLNLLARND---LDLSIVTREPGTEIGQLLRQEPFVWMAAEGFCPHDQRPIPL 183 Query: 181 ALYRERSVSRDAALSALRDGELGWEIVYTSPSLTGVRAAAVAGLAVTPLPLSAVTTGLRI 240 A++ R A +AL EL + I Y+SPSL+ + A AGLAVT S +T LRI Sbjct: 184 AMFNTTCFCRAWACNALEAAELDYRIAYSSPSLSALFAVVSAGLAVTVQLRSLLTGNLRI 243 Query: 241 LGIGDGLPPLP 251 L +GLP LP Sbjct: 244 LDESEGLPALP 254 >PA2497 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 292 Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 119/281 (42%), Positives = 153/281 (54%), Gaps = 3/281 (1%) Query: 1 MLDLELLRAFVAVADCGGFHRAAEQLHLTQSTISQQIKRLELETRRPLFRRTTRSVALTD 60 MLDL LLR FV+V D G F RA E LHLTQST+SQQ+ RLE L R+ R V T+ Sbjct: 1 MLDLVLLRTFVSVVDTGNFTRAGEHLHLTQSTVSQQVIRLEQNLGCRLLDRSQRQVLPTE 60 Query: 61 EGEMLLGDARRLLQLEEAARQRLVAPRLSGAVRLGVVEEVAGGSLPSALGRFAALHRGVK 120 EGE LLG ARRLL+L + A + L G +RLGV E++AG L L RF ++ Sbjct: 61 EGERLLGYARRLLRLSDEASEALSPAHGDGVLRLGVPEDLAGEVLMPVLTRFTEERPRLR 120 Query: 121 LEVQIGVSAELIEQLDAGRLDLVFAKRPLGTSKGRLVWREPLVW--TAADTF-DLVPGAP 177 LEV+ G+S L+ +G LDL+ K+ S W EPL W +AA F + P P Sbjct: 121 LEVESGLSHHLLRLYRSGELDLLLVKQWGADSDCHARWAEPLGWFGSAARPFGEGSPEEP 180 Query: 178 LPLALYRERSVSRDAALSALRDGELGWEIVYTSPSLTGVRAAAVAGLAVTPLPLSAVTTG 237 +PL ++ ++ R + AL W I Y+S SL + AA AGL V+ LPL V Sbjct: 181 VPLVVFPVGALYRQEMIHALESIGRRWRIGYSSASLASLVAAVGAGLGVSLLPLGCVGPE 240 Query: 238 LRILGIGDGLPPLPDLEFAIYEKRRPDKAAEALADALLTLA 278 R+LG G PP+ LE A+Y + D A L D L L Sbjct: 241 HRLLGAQAGFPPIAGLELALYARPELDSAGRTLRDRLRDLC 281 >RSc0615 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 289 Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 113/285 (39%), Positives = 161/285 (56%), Gaps = 5/285 (1%) Query: 2 LDLELLRAFVAVADCGGFHRAAEQLHLTQSTISQQIKRLELETRRPLFRRTTRSVALTDE 61 L L+ L+ FVAV D G AA ++H +QS +S Q+K+LE L R R + LT E Sbjct: 6 LQLDWLKCFVAVVDAGSLSSAAGEVHRSQSAVSMQLKKLEGALGSRLLERDARKLELTPE 65 Query: 62 GEMLLGDARRLLQLEEAARQRLVAPRLSGAVRLGVVEEVAGGSLPSALGRFAALHRGVKL 121 G+MLLG ARR+L L A+ L L+G VRLGV ++ A L L RFA H GV++ Sbjct: 66 GQMLLGYARRILDLHAEAQAALSGEELTGRVRLGVPDDYAAKYLTPVLKRFAPRHGGVEI 125 Query: 122 EVQIGVSAELIEQLDAGRLDLVFAKRPLGTSKGRLVWREPLVWTAADTFDLVPGAPLPLA 181 E+ S LI ++ +G LDL R + +G L++ EP+VW A F+L PLP+A Sbjct: 126 ELDCEQSTSLIPRVASGDLDLALVSRD-HSRRGILLFHEPMVWVGAVQFELWRRDPLPIA 184 Query: 182 LYRERSVSRDAALSALRDGELGWEIVYTSPSLTGVRAAAVAGLAVTPLPLSAVTTGLRIL 241 +Y + S++R +A+ +L +++VY S SL G AA +GLAV L + L+IL Sbjct: 185 VYEDTSLARRSAIHSLAQQGRRYKVVYNSSSLAGQIAAVESGLAVAALTQCSAPGHLQIL 244 Query: 242 GIGDGLPPLPDLEFAIYEKR--RPDKAAEALADALLTLAR--GPL 282 G GL PL +E A+Y R R KA ++L + L+ R GP+ Sbjct: 245 GSEHGLGPLEPMEVAVYRSRASRGSKAVDSLQNLLVRTLRLSGPI 289