BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0007.p         (137 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc1655 [O] COG0229 Conserved domain frequently associated with ...   164   5e-41
SMc00117 [O] COG0229 Conserved domain frequently associated with...   158   3e-39
RSc1747 [O] COG0229 Conserved domain frequently associated with ...   157   6e-39
MA0449 [O] COG0229 Conserved domain frequently associated with p...   151   3e-37
alr3901 [O] COG0229 Conserved domain frequently associated with ...   147   9e-36

>AGc1655 [O] COG0229 Conserved domain frequently associated with peptide
           methionine sulfoxide reductase Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 135

 Score =  164 bits (415), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 93/131 (70%), Gaps = 1/131 (0%)

Query: 1   MSDTKTDGKVRKSETEWRKELTPIQYAVLREKATERPFTGEYEHDPRKGTYVCAGCGQTL 60
           MSD  T  KV KS+ +WR++LTP QY +LRE  TERPFTG Y +   KG Y CA C + L
Sbjct: 1   MSDL-TSPKVNKSDADWREQLTPEQYHILREHGTERPFTGPYWNSTEKGLYRCAACDEPL 59

Query: 61  FESDQKFDSGCGWPSFSKPAIESHVDEERDMSHGMIRTEVLCSKCDGHLGHVFNDGPGPT 120
           F SD KFD+GCGWPS+ +P     V E RD +HGM+RTE+ C+ C GHLGHVF DGP PT
Sbjct: 60  FLSDTKFDAGCGWPSYFEPVKPGAVTEHRDSTHGMVRTEIRCANCGGHLGHVFPDGPPPT 119

Query: 121 GLRYCINSAAL 131
           GLRYCIN  ++
Sbjct: 120 GLRYCINGHSM 130


>SMc00117 [O] COG0229 Conserved domain frequently associated with peptide
           methionine sulfoxide reductase Sme Sinorhizobium
           meliloti
          Length = 153

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 84/127 (66%)

Query: 9   KVRKSETEWRKELTPIQYAVLREKATERPFTGEYEHDPRKGTYVCAGCGQTLFESDQKFD 68
           K+ K+  EWR  LTP QY V RE  TERPFTG +  + R GTY C  CG+ LF SD KFD
Sbjct: 26  KITKTNEEWRAALTPEQYRVTREHGTERPFTGPFLDNKRHGTYKCVCCGRALFRSDTKFD 85

Query: 69  SGCGWPSFSKPAIESHVDEERDMSHGMIRTEVLCSKCDGHLGHVFNDGPGPTGLRYCINS 128
           SGCGWPS+  P     + E  D SH M+RTE+ C+ CD HLGHVF DGP PTGLRYC+N 
Sbjct: 86  SGCGWPSYFAPVDPDAIAEYVDRSHLMVRTEIRCADCDAHLGHVFPDGPPPTGLRYCLNG 145

Query: 129 AALKLNE 135
            A+   E
Sbjct: 146 TAMTFEE 152


>RSc1747 [O] COG0229 Conserved domain frequently associated with peptide
           methionine sulfoxide reductase Rso Ralstonia
           solanacearum
          Length = 128

 Score =  157 bits (397), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 86/126 (68%)

Query: 10  VRKSETEWRKELTPIQYAVLREKATERPFTGEYEHDPRKGTYVCAGCGQTLFESDQKFDS 69
           + K++ EWR +L+ I+Y V RE ATERPFTG Y     +G Y C  CG  LFES  KFD+
Sbjct: 3   IEKTDAEWRDQLSDIEYRVTREAATERPFTGRYWDHWARGIYHCVCCGTPLFESSTKFDA 62

Query: 70  GCGWPSFSKPAIESHVDEERDMSHGMIRTEVLCSKCDGHLGHVFNDGPGPTGLRYCINSA 129
           GCGWPS+  P     + E+ D SHGM+R EV C +C  HLGHVF DGP PTGLRYCINSA
Sbjct: 63  GCGWPSYFAPINGEVIAEKTDHSHGMVRIEVQCKQCGAHLGHVFEDGPAPTGLRYCINSA 122

Query: 130 ALKLNE 135
           ALK  +
Sbjct: 123 ALKFGD 128


>MA0449 [O] COG0229 Conserved domain frequently associated with peptide
           methionine sulfoxide reductase Mac Methanosarcina
           acetivorans str.C2A
          Length = 147

 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 84/123 (68%)

Query: 9   KVRKSETEWRKELTPIQYAVLREKATERPFTGEYEHDPRKGTYVCAGCGQTLFESDQKFD 68
           K+ KSE EW+K LTP QY VLR+K TE+PF+G   ++  KG Y CA CGQ LF SD KF+
Sbjct: 12  KIEKSEEEWKKILTPEQYHVLRQKGTEKPFSGNLYYNKEKGVYTCAACGQELFSSDTKFE 71

Query: 69  SGCGWPSFSKPAIESHVDEERDMSHGMIRTEVLCSKCDGHLGHVFNDGPGPTGLRYCINS 128
           SG GWPSF        V  + D S+ M R EV+CS+C  HLGHVF DGP PTG RYCINS
Sbjct: 72  SGTGWPSFYDAISSDKVRLKEDNSYFMHRIEVVCSRCGSHLGHVFEDGPVPTGKRYCINS 131

Query: 129 AAL 131
            +L
Sbjct: 132 VSL 134


>alr3901 [O] COG0229 Conserved domain frequently associated with peptide
           methionine sulfoxide reductase Nos Nostoc sp. PCC 7120
          Length = 164

 Score =  147 bits (370), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 71/133 (53%), Positives = 87/133 (65%), Gaps = 1/133 (0%)

Query: 1   MSDTKTDGKVRKSETEWRKELTPIQYAVLREKATERPFTGEYEHDPRKGTYVCAGCGQTL 60
           M+ + T  ++ KSE EW+  LTP Q+ VLR+  TER FT   + +  +GTYVCA C Q L
Sbjct: 30  MATSNTKFEIAKSEQEWQTILTPEQFRVLRKHGTERAFTSPLDKEYSQGTYVCAACDQPL 89

Query: 61  FESDQKFDSGCGWPSFSKPAIESHVDEERDMSHGMIRTEVLCSKCDGHLGHVFNDGPGPT 120
           F SD KF+SG GWPSF  P IE  +    D S  M R EV CS+C GHLGHVF+DGP PT
Sbjct: 90  FTSDTKFNSGTGWPSFFNP-IEGGIGTTVDRSFFMTRVEVHCSRCGGHLGHVFDDGPAPT 148

Query: 121 GLRYCINSAALKL 133
           G RYC+N  +LK 
Sbjct: 149 GKRYCMNGVSLKF 161