BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0037.p (218 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20078 [TK] COG2197 Response regulator containing a CheY-like ... 136 3e-32 PA3879 [TK] COG2197 Response regulator containing a CheY-like re... 115 9e-26 SMb20468 [TK] COG2197 Response regulator containing a CheY-like ... 110 2e-24 BH2213 [TK] COG2197 Response regulator containing a CheY-like re... 108 8e-24 PM1810 [TK] COG2197 Response regulator containing a CheY-like re... 107 2e-23 >SMb20078 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sme Sinorhizobium meliloti Length = 211 Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 6 VVIASRYPVVLLGLNCLLEAERDFKVVARCNDIASCFKAMQTLAPDIAILDMSMPDIFGQ 65 V++ +P++L GL ++ A DF VV + L PDIA+LD++MP + G Sbjct: 4 VLLVDDHPLLLRGLQDIIAAAPDFDVVGATASGVEAISLISGLQPDIAVLDVAMPGMGGL 63 Query: 66 AMLEVANSGALGVRLVFLAASVEDRDLAMLAAAGACGVLLSEEEPETLLQTLRQVADGQK 125 +L + R++FL A++ +A G G+LL E PE LL +R+VA G K Sbjct: 64 EILRAIRNPRRLTRVIFLTATISGPQIAEALKMGLSGLLLKEYAPEALLDCMRRVAMGGK 123 Query: 126 TLPSPSYEEAIPYAQTTIPEKYLAVLTDRERQIMRLVSEGLSNKEIGRRLKVADGTIKVH 185 LP+ A + E++ ++LT RER+I L+ GLSN+ I RL ++GT+ +H Sbjct: 124 WLPADLMANASQVSNDAPLERF-SLLTPREREISALICGGLSNRMIASRLGTSEGTVGIH 182 Query: 186 LHHIFRKLEISNRTVLATLAVSYSGP 211 LH+IFRKL+ISNR LA L V Y+ P Sbjct: 183 LHNIFRKLDISNRATLAALHVQYTNP 208 >PA3879 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 219 Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 2/203 (0%) Query: 5 RVVIASRYPVVLLGLNCLLEAERDFKVVARCNDIASCFKAMQTLAPDIAILDMSMPDIFG 64 R+++ +P++ G+ LLE E D VV + L PD+ +LD++M + G Sbjct: 13 RLLLVDDHPMMRKGVAQLLELEDDLSVVGEAGSGEEALRLAAELDPDMILLDLNMKGMNG 72 Query: 65 QAMLEVANSGALGVRLVFLAASVEDRDLAMLAAAGACGVLLSEEEPETLLQTLRQVADGQ 124 L + R+V S + D+ + AGA G LL + EPE LL+ +RQ A GQ Sbjct: 73 LDTLRALREAGVDARIVVFTVSDDKGDVVNVLRAGADGYLLKDMEPERLLEHIRQAATGQ 132 Query: 125 KTLPSPSYEEAIPYA-QTTIPEKYLAVLTDRERQIMRLVSEGLSNKEIGRRLKVADGTIK 183 TL SP + + A + K L LT+RERQI+R ++ G SNK I R+L + +GT+K Sbjct: 133 MTL-SPQLTQILAQALRGDDRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVK 191 Query: 184 VHLHHIFRKLEISNRTVLATLAV 206 VH+ + KL + +R A AV Sbjct: 192 VHVKRVLHKLGMRSRVEAAVWAV 214 >SMb20468 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sme Sinorhizobium meliloti Length = 214 Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 111/203 (54%), Gaps = 2/203 (0%) Query: 5 RVVIASRYPVVLLGLNCLLEAERDFKVVARCNDIASCFKAMQTLAPDIAILDMSMPDIFG 64 R+++ + +VL GL LL AE ++VVA C A +A+ + D+A++D+ MP++ G Sbjct: 4 RILVVDDHRIVLDGLRRLLGAESGWEVVATCRTAADAIEALASKPVDLAVVDLRMPEMGG 63 Query: 65 QAMLEVANSGALGVRLVFLAASVEDRDLAMLAAAGACGVLLSEEEPETLLQTLRQVADGQ 124 ++ S + V L A + D +LA G G++L E+ P L++ +R V +G+ Sbjct: 64 SDLIRRLRSDQPRLACVILTADISDEELAEAIENGVSGIVLKEQAPSALIECIRAVLEGR 123 Query: 125 KTLPSPSYEEAIPYAQTTIPEK--YLAVLTDRERQIMRLVSEGLSNKEIGRRLKVADGTI 182 S AI + + E+ + LT RE +I L + GL ++EI RL +A GT+ Sbjct: 124 TYFTDRSLNAAIDRIRESDTERRSVMQKLTPRELEISCLAAAGLRSREIAARLGIAPGTV 183 Query: 183 KVHLHHIFRKLEISNRTVLATLA 205 K+HLH ++ KL I+ R LA ++ Sbjct: 184 KLHLHSVYSKLNIATRVELANIS 206 >BH2213 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Bha Bacillus halodurans Length = 217 Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 5 RVVIASRYPVVLLGLNCLLEAERDFKVVARCNDIASCFKAMQTLAPDIAILDMSMPDIFG 64 R+ + + VV GL LE DF +V D + ++ + PDI ++D+ MP I G Sbjct: 4 RIAVVDDHHVVRKGLIYFLETYHDFTIVGEAEDGEAALTLVEKVQPDIVLMDVIMPGING 63 Query: 65 QAMLEVANSGALGVRLVFLAASVEDRDLAMLAAAGACGVLLSEEEPETLLQTLRQVADGQ 124 + V +V L++S E + AGA G L E +PE L +T+R V G+ Sbjct: 64 IEATKKIKQKWPTVHVVVLSSSAERESVIPALQAGANGYQLKEVDPEMLAETIRAVCSGE 123 Query: 125 KTLPSPSYEEAIP--YAQTTIPEKYLAVLTDRERQIMRLVSEGLSNKEIGRRLKVADGTI 182 L + + + EK L LT+RE+ ++R +++G SNKEI L +++ T+ Sbjct: 124 SRLHPKVTKHVLTRMNGDESEEEKRLRDLTNREKDVLRELAKGQSNKEIASELHISEKTV 183 Query: 183 KVHLHHIFRKLEISNRTVLATLAVSY 208 K H+ +IF KL++ +RT A A+ Y Sbjct: 184 KTHVSNIFWKLDVHDRTQAALFAIKY 209 >PM1810 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pmu Pasteurella multocida Length = 209 Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 116/207 (56%), Gaps = 5/207 (2%) Query: 5 RVVIASRYPVVLLGLNCLLEAERDFKVVARCNDIASCFK-AMQTLAPDIAILDMSMPDIF 63 +V+I +P++ G+ L+E +F+VVA + + A+QT PD+ ILD++M + Sbjct: 6 KVLIIDDHPLMRRGIKQLMELAPNFEVVADAGNGSEGISLALQT-QPDLIILDLNMKGLS 64 Query: 64 GQAMLEVANSGALGVRLVFLAASVEDRDLAMLAAAGACGVLLSEEEPETLLQTLRQVADG 123 G L+ + + R++ L S D+ L AGA G LL + EP+ LL ++++A G Sbjct: 65 GLDTLKALRAEGIDARILILTVSDLKSDIFTLIDAGADGYLLKDTEPDALLSQIQRIAQG 124 Query: 124 QKTLPSPSYEEAIPYAQTTIPEKYLAVLTDRERQIMRLVSEGLSNKEIGRRLKVADGTIK 183 + L S S ++A+ Q Y LTDRE ++RL++ GLSNK+I +L +++ T+K Sbjct: 125 EVIL-SDSIKDALIERQMNADPIY--SLTDREMDVLRLIATGLSNKQIAGQLFISEETVK 181 Query: 184 VHLHHIFRKLEISNRTVLATLAVSYSG 210 VH+ ++ RKL + +R L + G Sbjct: 182 VHIRNLLRKLNVHSRVAATVLYFEHKG 208