BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0024.p         (442 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA1053 [R] COG2244 Membrane protein involved in the export of O-...    66   2e-10
PAB0783 [R] COG2244 Membrane protein involved in the export of O...    62   4e-09

>MA1053 [R] COG2244 Membrane protein involved in the export of O-antigen
           and teichoic acid Mac Methanosarcina acetivorans str.C2A
          Length = 519

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 172/409 (42%), Gaps = 26/409 (6%)

Query: 5   EEYGAL---MSLMTFALVASTVGLVGQQFRVLREIPSIAARKNYPEIGAIVAKRLRVACL 61
            EYG      +LM+  +  ST+GL        R I    A      I   V   + +A +
Sbjct: 44  NEYGLYSMAFTLMSVLITISTLGLYDGT---TRYIAKFRAENKSDNIQDTVLSSMLIALI 100

Query: 62  GSVAVTVIALLPFVAAHGRNGI----FGSWQYATSVLLI-LPLSLI-EMQSSLGRTLGSV 115
            SV +T++A      A G   I            ++LLI +PLS++  +  S+ R  G  
Sbjct: 101 SSVLITILA----YTASGYIAINIYDLPELSPVFNILLIAIPLSVLSNIFISIFRGFGES 156

Query: 116 NLALVSKDVLW--RFLIILLGAVLFTTYGHPLPAQDVLLIATAILVVLIAAQNIYLRHLA 173
            + +   ++L    +L+ L+ AV      H +    V +   +IL+  +A    ++R   
Sbjct: 157 KIKVFLNEILRPVTYLLFLIPAVFLQFSFHTM----VYVYVISILITFLAFLFYFIR--K 210

Query: 174 EGCKVFTMAVRRSNDRLGEVLSTSGPFWVTSVTSIMGGTVDLVVISVMVGPEAAGYYYAA 233
              K+    VR  N    E+L  S P    ++   +    D +++     PE  G Y AA
Sbjct: 211 PPLKLNWNRVR-INHITKELLVYSLPLLAVNILLTVMSWTDTLMLGYFRTPEVVGMYNAA 269

Query: 234 SRIALLLDFFLATFCIPAAPLIARLFDENRHAEITRITSGASLGAFVAVLGCVATLALGG 293
             IA LL  F+ +      P+I++L+ +N+  E+  + + ++  AF+      A   L  
Sbjct: 270 YTIANLLSVFINSVGYLYVPIISQLYSKNQIEELGVVNATSTKWAFMFTFPMFALFFLYP 329

Query: 294 DLALMAFGET-FTRAYSVLMVLAIGMLVSTYFGIGPIALNMTGHQRAAMHIVVITWVAGI 352
           D  L  F ++ +  + +V  +L +G + + YFG+    L   G     M+  +I+ V  I
Sbjct: 330 DFILTFFYDSRYVASSTVFQILVLGFITNAYFGLNYHTLMSAGKSYFLMNCSLISSVLNI 389

Query: 353 LAMIGATWTFGTIGAAVAGSCAGIATRVWTAAYIYSAEGIDITATTALR 401
           +  +     FG +GAA+A + +  +  V+    +Y    I       LR
Sbjct: 390 ILNLILIPPFGMVGAAIASALSFASIEVYMTVKLYKFLKIHPFTNVYLR 438


>PAB0783 [R] COG2244 Membrane protein involved in the export of O-antigen
           and teichoic acid Pab Pyrococcus abyssi
          Length = 511

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 1/191 (0%)

Query: 214 DLVVISVMVGPEAAGYYYAASRIALLLDFFLATFCIPAAPLIARLFDENRHAEITRITSG 273
           D ++I   +     G Y +A+ +A +L  FLA+F     P+ ++L+ + +  E+ R+   
Sbjct: 246 DTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPISSQLYAQGKVKEMGRVYQM 305

Query: 274 ASLGAFVAVLGCVATLALGGDLAL-MAFGETFTRAYSVLMVLAIGMLVSTYFGIGPIALN 332
            +   F+  L     L L     +   FGE +  A   L +LAIG +  T+ G+  + L 
Sbjct: 306 TTKWTFLLTLPMFLMLVLFPQATISFIFGEKYLDASVALQILAIGFMFHTFLGLNGLTLV 365

Query: 333 MTGHQRAAMHIVVITWVAGILAMIGATWTFGTIGAAVAGSCAGIATRVWTAAYIYSAEGI 392
           + G  +  M   +I  ++ IL  I     +G  GAA A S + I    + + ++Y   GI
Sbjct: 366 IIGESKLNMIGDLIAALSNILLNIALIPFYGVNGAAFATSVSYIVANFFRSFWLYRKTGI 425

Query: 393 DITATTALRAL 403
                  L+ L
Sbjct: 426 HPFTKNYLKPL 436