BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0081.p (195 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all4972 [K] COG1695 Predicted transcriptional regulators Nos Nos... 124 1e-28 VC2647 [K] COG1695 Predicted transcriptional regulators Vch Vibr... 119 6e-27 Rv1176c [K] COG1695 Predicted transcriptional regulators Mtu Myc... 108 6e-24 MT1213 [K] COG1695 Predicted transcriptional regulators MtC Myco... 107 2e-23 RSp0309 [K] COG1695 Predicted transcriptional regulators Rso Ral... 99 7e-21 >all4972 [K] COG1695 Predicted transcriptional regulators Nos Nostoc sp. PCC 7120 Length = 179 Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 105/182 (57%), Gaps = 9/182 (4%) Query: 1 LALGDAILACLTERPMTGYELAKTFDASIGFFWKADHQQIYRELSRLRDKGHVQGREVVQ 60 + L AIL CL + P +GY+L+K F S+G+FW+A QQIYREL +L G + + + Sbjct: 1 MGLSQAILTCLIDAPHSGYDLSKVFSESVGYFWQASQQQIYRELGKLESAGLIVSEVIPR 60 Query: 61 SGKPNKLVYTLTAEGRAALKHWAARPSVPPSIKDDLLVRLYALDCVDIEPLRTDLMARLE 120 G+ +K VY++T +G+ L W +PS P I++DLLV++++ V + L D+ Sbjct: 61 EGRLDKKVYSITEQGKQQLIEWMHKPSEPDVIREDLLVKIFSGGLVPVSLLIEDVTRHRR 120 Query: 121 HHRDRYERYERLLNKRFPDGTAPPADVGK-----MLSLRLGMRHERMVVEWCEEALDALS 175 H ++ Y + ++FP P ++ K L L+ G+++E+ +EWC++AL+ L Sbjct: 121 IHLEKLLTYGEIEKEKFPY----PKELNKEEKLRTLVLKAGIKYEQAWIEWCDDALEVLK 176 Query: 176 AM 177 + Sbjct: 177 NL 178 >VC2647 [K] COG1695 Predicted transcriptional regulators Vch Vibrio cholerae Length = 179 Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 9/183 (4%) Query: 1 LALGDAILACLTERPMTGYELAKTFDASIGFFWKADHQQIYRELSRLRDKGHVQGREVVQ 60 ++L IL L+ R TGY++ K F ASIG+FWKA HQQ+YREL+++ ++G V Q Sbjct: 1 MSLPHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQ 60 Query: 61 SGKPNKLVYTLTAEGRAALKHWAARPSVPPSIKDDLLVRLYALDCVDIEPLRTDLMARLE 120 GKP++ VY++T GR+AL W +P+ P+++D+ +L A EP R L +E Sbjct: 61 EGKPDRKVYSITQAGRSALGEWFDQPTAHPTVRDEFSAKLMACSVQSAEPYRLQLAELVE 120 Query: 121 HHRDRYERYERLLNKRFPDGTAPPADVGKMLSL-RLGMRHERMV----VEWCEEALDALS 175 R Y+ + + A PA + K L RL +R +V ++W +E L L+ Sbjct: 121 ESRKLVAHYQEIEAAYY----ANPAVLDKQQRLERLTLRRNLLVRQAWIQWADEVLAELN 176 Query: 176 AMS 178 AM+ Sbjct: 177 AMA 179 >Rv1176c [K] COG1695 Predicted transcriptional regulators Mtu Mycobacterium tuberculosis H37Rv Length = 189 Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 94/185 (50%), Gaps = 11/185 (5%) Query: 1 LALGDAILACLTERPMTGYELAKTFDASIGFFWKADHQQIYRELSRLRDKGHVQGREVVQ 60 +AL AIL L E+ +GYELA+ FD SIG+FW A HQQIYR L + + V+ V+Q Sbjct: 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 Query: 61 SGKPNKLVYTLTAEGRAALKHWAARPSVPP----------SIKDDLLVRLYALDCVDIEP 110 G+P+K VY ++ GRA L W A P P S D+ V+L D+ Sbjct: 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 Query: 111 LRTDLMARLEHHRDRYERYERLLNKRFPDGTA-PPADVGKMLSLRLGMRHERMVVEWCEE 169 L T + A + Y + + F D +A A + + L LR G+R E ++W +E Sbjct: 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 Query: 170 ALDAL 174 +AL Sbjct: 181 VAEAL 185 >MT1213 [K] COG1695 Predicted transcriptional regulators MtC Mycobacterium tuberculosis CDC1551 Length = 247 Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 94/185 (50%), Gaps = 11/185 (5%) Query: 1 LALGDAILACLTERPMTGYELAKTFDASIGFFWKADHQQIYRELSRLRDKGHVQGREVVQ 60 +AL AIL L E+ +GYELA+ FD SIG+FW A HQQIYR L + + V+ V+Q Sbjct: 59 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 118 Query: 61 SGKPNKLVYTLTAEGRAALKHWAARPSVPP----------SIKDDLLVRLYALDCVDIEP 110 G+P+K VY ++ GRA L W A P P S D+ V+L D+ Sbjct: 119 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 178 Query: 111 LRTDLMARLEHHRDRYERYERLLNKRFPDGTA-PPADVGKMLSLRLGMRHERMVVEWCEE 169 L T + A + Y + + F D +A A + + L LR G+R E ++W +E Sbjct: 179 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 238 Query: 170 ALDAL 174 +AL Sbjct: 239 VAEAL 243 >RSp0309 [K] COG1695 Predicted transcriptional regulators Rso Ralstonia solanacearum Length = 178 Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 3/178 (1%) Query: 1 LALGDAILACLTERPMTGYELAKTFDASIGFFWKADHQQIYRELSRLRDKGHVQGREVVQ 60 +++ A+L L E+P +GYELA+ FD S+G+FW A HQQIYREL R+ + G V V + Sbjct: 1 MSIQHALLTSLLEKPSSGYELARRFDKSMGYFWSATHQQIYRELGRMAEVGWVS---VEE 57 Query: 61 SGKPNKLVYTLTAEGRAALKHWAARPSVPPSIKDDLLVRLYALDCVDIEPLRTDLMARLE 120 K YT+ GR L WA P+V +++LLV+L A + L ++ +E Sbjct: 58 EEDGRKKTYTVLPSGREELIRWALEPTVSSDNREELLVKLRAEAVIGPIGLADEMQRLIE 117 Query: 121 HHRDRYERYERLLNKRFPDGTAPPADVGKMLSLRLGMRHERMVVEWCEEALDALSAMS 178 HR R Y + + F + LR G+ +E + W E L L S Sbjct: 118 QHRARLATYREIEQRDFSGTGLTRVQRLQHTVLRRGIVYEEGWLVWAGEVLPLLEPAS 175