BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0045.p         (237 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0443 [K] COG1309 Transcriptional regulator Rso Ralstonia sola...    65   1e-10
PA3721 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer...    63   7e-10
PA3678 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer...    60   3e-09
mlr4833 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...    59   8e-09

>RSp0443 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 209

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 4/195 (2%)

Query: 33  DARILDAARKLFLQRGFEGASIDEIAEVARSGKRTIYARFRDKRALFTEVVTRDILSRIA 92
           +  +L AA  +FL  GF  A+ D I   A   K T+YA F +K A+F  V+ R+      
Sbjct: 13  ETSVLKAATAVFLAHGFSAATTDMIQRRASVSKATMYACFPNKEAMFAAVIERECAVMAE 72

Query: 93  EFKADPPVGATIEERLTSVASTLLHWGFDADRIGLMRLAIAEAHRFPDLAANVNRRARAL 152
             +A       I   LT +  + L +      + L R+ +AEA RFPDLA         +
Sbjct: 73  TIRAIQTAPGDIARTLTDIGLSYLRFVVAPTALALYRVVVAEAPRFPDLARRFYLAGPKV 132

Query: 153 STELGIHLLRDLTQSDELGKLPAFAPEQLPTTARMFLDIIAVPMLLRALFEVDLKALDPE 212
            T +    L++  Q  E+  + A   E     A +F+ ++     L +L   D +    +
Sbjct: 133 VTSMVAARLKEAAQDGEI-NIQAVGVE---AAATLFISLVRTEGQLESLTHPDAQPSAAQ 188

Query: 213 IDAHVARGVAFFVAA 227
           +D  V   V  F+AA
Sbjct: 189 LDHWVQLAVTTFMAA 203


>PA3721 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 213

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 24/180 (13%)

Query: 36  ILDAARKLFLQRGFEGASIDEIAEVARSGKRTIYARFRDKRALFTEVVTRDILSRIAEFK 95
           +LDAA + FL+ GFEG ++D + E A   + T+Y+ F  K  LF  V+   ++  I +  
Sbjct: 19  MLDAATQAFLEHGFEGTTLDMVIERAGGSRGTLYSSFGGKEGLFAAVIAH-MIGEIFDDS 77

Query: 96  ADPPVGATIEERLTSVASTLLHWG-------FDADRIGLMRLAIAEAHRFPDLAANVNRR 148
           AD P  A       ++++TL H+G        D     L RL +AE+ RFP +  +   +
Sbjct: 78  ADQPRPA------ATLSATLEHFGRRFLTSLLDPRCQSLYRLVVAESPRFPAIGKSFYEQ 131

Query: 149 ARALSTELGIHLLRDLTQSDELGKL-PAFAPEQLPTTARMFLDIIAVPMLLRALFEVDLK 207
               S          L  S+ L  + P    E L   A  FL+++   + L+AL   D +
Sbjct: 132 GPQQSY---------LLLSERLAAVAPHMDEETLYAVACQFLEMLKADLFLKALSVADFQ 182


>PA3678 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 212

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%)

Query: 36  ILDAARKLFLQRGFEGASIDEIAEVARSGKRTIYARFRDKRALFTEVVTRDILSRIAEFK 95
           IL+AA++LFL  G++G+S++ IA  A   K T+Y+ F DK  LF+E V      ++    
Sbjct: 22  ILEAAKRLFLCNGYDGSSMEAIASEAGVSKLTVYSHFTDKETLFSEAVKAKCAEQLPALY 81

Query: 96  ADPPVGATIEERLTSVASTLLHWGFDADRIGLMRLAIAEAHRFPDLA 142
                GA +E+ L ++A          + I L RL  A+A + P L+
Sbjct: 82  FQLAEGAPLEKVLLNIARGFHRLINSHEAIALTRLMAAQAGQNPKLS 128


>mlr4833 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 210

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 9/116 (7%)

Query: 33  DARILDAARKLFLQRGFEGASIDEIAEVARSGKRTIYARFRDKRALFTEVV------TRD 86
           D  I+ AA   F+ +G++G S++EIA  A + K+T+Y  F DK  LF EVV        D
Sbjct: 13  DREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLSTASQVND 72

Query: 87  ILSRIAEFKADPPVGATIEERLTSVASTLLHWGFDADRIGLMRLAIAEAHRFPDLA 142
           I+  +    ++      +E  L  +A  L+    D + + L RL IA A R P L 
Sbjct: 73  IIESVTTLLSEAIF---MEGGLQQLARRLIAVLMDEELLKLRRLIIANADRMPQLG 125