BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0028.p         (186 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0552 [R] COG2215 ABC-type uncharacterized transport system, p...   220   2e-57
ZyohM [R] COG2215 ABC-type uncharacterized transport system, per...   162   3e-40
ECs2912 [R] COG2215 ABC-type uncharacterized transport system, p...   161   7e-40
yohM [R] COG2215 ABC-type uncharacterized transport system, perm...   161   8e-40
STM3024 [R] COG2215 ABC-type uncharacterized transport system, p...   157   2e-38

>RSp0552 [R] COG2215 ABC-type uncharacterized transport system, permease
           component Rso Ralstonia solanacearum
          Length = 377

 Score =  220 bits (560), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/201 (58%), Positives = 139/201 (69%), Gaps = 16/201 (7%)

Query: 2   TIRPDGSEQRFRFAGHGGYLESIDEIPEPHAFKARVSVRAD----MAEVLFEEH--DHAH 55
           T RPDG+ Q F F    G++ES   IPEPH F AR+S+  D      +V F EH  DH H
Sbjct: 176 TERPDGTRQSFHFVQRDGFVESEQTIPEPHEFVARLSLGRDRHRHSYDVEFVEHGHDHPH 235

Query: 56  MDLGDED----------DAHARAHAADIRKRFAGRTVTTWQIILFGLTGGLIPCPAAITV 105
             + D D          DAH  AHA DIR+RFA R VTT QII+FGLTGGLIPCPA+ITV
Sbjct: 236 HAIQDYDGLDLSAPGYQDAHELAHANDIRRRFANRHVTTGQIIVFGLTGGLIPCPASITV 295

Query: 106 LLLCLQLKQFSLGFVLVLCFGIGLAITMVSAGVAAALSLRHVERHWAGFSRFAHRAPYVS 165
           LLLCLQLKQ +LG  LVLCF IGLA+TMV++G  AALS++HV + W+GF  FA +APY S
Sbjct: 296 LLLCLQLKQITLGATLVLCFSIGLAMTMVASGALAALSVKHVSKRWSGFGDFARKAPYFS 355

Query: 166 AALIVLVGLYTGWLGLHGITA 186
            ALIVLVGLY GW GL G+T+
Sbjct: 356 GALIVLVGLYVGWQGLRGLTS 376


>ZyohM [R] COG2215 ABC-type uncharacterized transport system, permease
           component EcZ Escherichia coli O157:H7 EDL933
          Length = 283

 Score =  162 bits (411), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 98/128 (76%)

Query: 57  DLGDEDDAHARAHAADIRKRFAGRTVTTWQIILFGLTGGLIPCPAAITVLLLCLQLKQFS 116
           D  +  DAHARAHA DI++RF GR VT WQI+LFGLTGGLIPCPAAITVLL+C+QLK  +
Sbjct: 154 DNEEYQDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLIPCPAAITVLLICIQLKALT 213

Query: 117 LGFVLVLCFGIGLAITMVSAGVAAALSLRHVERHWAGFSRFAHRAPYVSAALIVLVGLYT 176
           LG  LV+ F IGLA+T+V+ GV AA+S++ V + W+GF+  A RAPY S+ LI LVG+Y 
Sbjct: 214 LGATLVVSFSIGLALTLVTVGVGAAISVQQVAKRWSGFNTLAKRAPYFSSLLIGLVGVYM 273

Query: 177 GWLGLHGI 184
           G  G  GI
Sbjct: 274 GVHGFMGI 281


>ECs2912 [R] COG2215 ABC-type uncharacterized transport system, permease
           component Ecs Escherichia coli O157:H7
          Length = 279

 Score =  161 bits (408), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 78/123 (63%), Positives = 96/123 (78%)

Query: 62  DDAHARAHAADIRKRFAGRTVTTWQIILFGLTGGLIPCPAAITVLLLCLQLKQFSLGFVL 121
            DAHARAHA DI++RF GR VT WQI+LFGLTGGLIPCPAAITVLL+C+QLK  +LG  L
Sbjct: 155 QDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATL 214

Query: 122 VLCFGIGLAITMVSAGVAAALSLRHVERHWAGFSRFAHRAPYVSAALIVLVGLYTGWLGL 181
           V+ F IGLA+T+V+ GV AA+S++ V + W+GF+  A RAPY S+ LI LVG+Y G  G 
Sbjct: 215 VVSFSIGLALTLVTVGVGAAISVQQVAKRWSGFNTLAKRAPYFSSLLIGLVGVYMGVHGF 274

Query: 182 HGI 184
            GI
Sbjct: 275 MGI 277


>yohM [R] COG2215 ABC-type uncharacterized transport system, permease
           component Eco Escherichia coli K12
          Length = 274

 Score =  161 bits (407), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 78/123 (63%), Positives = 96/123 (78%)

Query: 62  DDAHARAHAADIRKRFAGRTVTTWQIILFGLTGGLIPCPAAITVLLLCLQLKQFSLGFVL 121
            DAHARAHA DI++RF GR VT WQI+LFGLTGGLIPCPAAITVLL+C+QLK  +LG  L
Sbjct: 150 QDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATL 209

Query: 122 VLCFGIGLAITMVSAGVAAALSLRHVERHWAGFSRFAHRAPYVSAALIVLVGLYTGWLGL 181
           V+ F IGLA+T+V+ GV AA+S++ V + W+GF+  A RAPY S+ LI LVG+Y G  G 
Sbjct: 210 VVSFSIGLALTLVTVGVGAAISVQQVAKRWSGFNTLAKRAPYFSSLLIGLVGVYMGVHGF 269

Query: 182 HGI 184
            GI
Sbjct: 270 MGI 272


>STM3024 [R] COG2215 ABC-type uncharacterized transport system, permease
           component Sty Salmonella typhimurium LT2
          Length = 288

 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 98/124 (79%), Gaps = 3/124 (2%)

Query: 62  DDAHARAHAADIRKRFAGRTVTTWQIILFGLTGGLIPCPAAITVLLLCLQLKQFSLGFVL 121
            DAH RAHAADI++RF G+TVT  QI+LFGLTGGLIPCPAAITVLL+C+QLK F+LG  +
Sbjct: 164 QDAHERAHAADIQRRFDGQTVTNGQILLFGLTGGLIPCPAAITVLLICIQLKAFTLGATM 223

Query: 122 VLCFGIGLAITMVSAGVAAALSLRHVERHWAGFSRFAHRAPYVSAALIVLVGLYTGWLGL 181
           VL F +GLA+T+V+ GV AA+S++   + W+GFS  A RAPY S+ LI LVG+Y   +G+
Sbjct: 224 VLSFSLGLALTLVTVGVGAAISVQQAAKRWSGFSTLARRAPYFSSILIGLVGVY---MGI 280

Query: 182 HGIT 185
           HG T
Sbjct: 281 HGYT 284