BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0020.p         (188 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI1544 [C] COG0711 F0F1-type ATP synthase, subunit b Bme Bruce...   153   2e-37
SMc00869 [C] COG0711 F0F1-type ATP synthase, subunit b Sme Sinor...   140   1e-33
mlr7413 [C] COG0711 F0F1-type ATP synthase, subunit b Mlo Mesorh...   134   1e-31
AGc1299 [C] COG0711 F0F1-type ATP synthase, subunit b Atu Agroba...   129   4e-30
CC0366 [C] COG0711 F0F1-type ATP synthase, subunit b Ccr Cauloba...    76   5e-14

>BMEI1544 [C] COG0711 F0F1-type ATP synthase, subunit b Bme Brucella
           melitensis
          Length = 180

 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/173 (46%), Positives = 113/173 (65%), Gaps = 4/173 (2%)

Query: 16  HTET----DGGHHGGAFPPFDSSNFASQLVSLAIAFVALYLIVSRFALPRVGGTIDARQN 71
           HTET    D GH  G FPPFDS+++ASQ++ LAI F   YL +SR  LPR+GG I+ R++
Sbjct: 2   HTETGVAHDAGHGSGVFPPFDSTHYASQVLWLAITFGLFYLFLSRVVLPRIGGVIETRRD 61

Query: 72  KIEGDLAEAQKLKDESDAALKAYETELANARANAQAIGNETREKLNAASEAERKALEEKL 131
           +I  DL +A +LK ++D A+ AYE ELA AR+ A +I    REK    ++AER + E  L
Sbjct: 62  RIAQDLEQAARLKQDADNAIAAYEQELAQARSKAASIAEAAREKGKGEADAERASAEAVL 121

Query: 132 AAKLADAEKQIATTRTNAMSNVRGIAADAAGAIVQQLAGVTPDANAVNSAVDA 184
            +KL +AE++IA  +  AMS+V  IA +    IV+QL G+T D  +V+ AV A
Sbjct: 122 ESKLKEAEERIAAIKAKAMSDVGNIAEETMATIVEQLLGLTADKASVSEAVKA 174


>SMc00869 [C] COG0711 F0F1-type ATP synthase, subunit b Sme Sinorhizobium
           meliloti
          Length = 204

 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 113/174 (64%), Gaps = 4/174 (2%)

Query: 16  HTETDGGH---HG-GAFPPFDSSNFASQLVSLAIAFVALYLIVSRFALPRVGGTIDARQN 71
           HTET   H   HG G FPPFD+++FASQL+ LAI F   YL++S+  +PR+GG ++ R +
Sbjct: 28  HTETGVAHEADHGAGVFPPFDTTHFASQLLWLAITFGLFYLLMSKVIIPRIGGILETRHD 87

Query: 72  KIEGDLAEAQKLKDESDAALKAYETELANARANAQAIGNETREKLNAASEAERKALEEKL 131
           +I  DL EA +LK E+DAA+ AYE ELA ARA   +I +  RE   A ++A+R  +E  L
Sbjct: 88  RIAQDLDEASRLKGEADAAIAAYEQELAGARAKGHSIADTAREAAKAKAKADRDGVEAGL 147

Query: 132 AAKLADAEKQIATTRTNAMSNVRGIAADAAGAIVQQLAGVTPDANAVNSAVDAS 185
           A K+A AE +IA  ++ A+++V  IA + A A+V+QL G T     + +A  AS
Sbjct: 148 AKKIAAAEARIADIKSKALADVGAIAEETATAVVKQLIGGTVTKAEIAAAFKAS 201


>mlr7413 [C] COG0711 F0F1-type ATP synthase, subunit b Mlo Mesorhizobium
           loti
          Length = 193

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 93/145 (64%)

Query: 26  GAFPPFDSSNFASQLVSLAIAFVALYLIVSRFALPRVGGTIDARQNKIEGDLAEAQKLKD 85
           G FPPFD + F SQL+ LAI F   YL + + A+PR+GG ID R ++I  DL +A KLK 
Sbjct: 32  GTFPPFDPATFPSQLLWLAITFGLFYLFLKKVAMPRIGGIIDVRNDRISQDLDQASKLKG 91

Query: 86  ESDAALKAYETELANARANAQAIGNETREKLNAASEAERKALEEKLAAKLADAEKQIATT 145
           E+DAA+ AYE ELA A+ NA +IG +  +   A +E  RK +E  L  KL +AE +I++ 
Sbjct: 92  EADAAVAAYEQELAEAKKNASSIGQQAADAAKAEAETARKKIEAALDEKLGEAEARISSI 151

Query: 146 RTNAMSNVRGIAADAAGAIVQQLAG 170
           + NAM  V  IA D A AIV+ L G
Sbjct: 152 KANAMKEVGSIAEDTASAIVEALVG 176


>AGc1299 [C] COG0711 F0F1-type ATP synthase, subunit b Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 215

 Score =  129 bits (324), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/179 (45%), Positives = 110/179 (61%), Gaps = 9/179 (5%)

Query: 1   MAESHGEA----KGQKAGAHTET---DGGHHG--GAFPPFDSSNFASQLVSLAIAFVALY 51
           + E+H E     + Q    HTET    G  HG  G FPPFD S +ASQ++ LAI F   Y
Sbjct: 16  VGETHTETPAVGQPQPEATHTETGVAHGAEHGASGVFPPFDQSTYASQVLWLAITFGLFY 75

Query: 52  LIVSRFALPRVGGTIDARQNKIEGDLAEAQKLKDESDAALKAYETELANARANAQAIGNE 111
           L++ +  +PRVGG ++ R  +I  DL EA +LK E+D A++ YE ELA ARA A +IG  
Sbjct: 76  LLMQKVIVPRVGGILENRHGRIAQDLDEAARLKAEADTAVETYEKELAAARAKASSIGAS 135

Query: 112 TREKLNAASEAERKALEEKLAAKLADAEKQIATTRTNAMSNVRGIAADAAGAIVQQLAG 170
            R+   A ++A+R A+E  LA KLA AEK+IA  R +A ++V  IA + A AIV QL G
Sbjct: 136 ARDAAKAKADADRAAIEAGLAEKLAAAEKRIAGIRDHAFADVGAIAEETATAIVDQLVG 194


>CC0366 [C] COG0711 F0F1-type ATP synthase, subunit b Ccr Caulobacter
           vibrioides
          Length = 177

 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 94/161 (58%), Gaps = 2/161 (1%)

Query: 23  HHGGAFPPFDSSNFASQLVSLAIAFVALYLIVSRFALPRVGGTIDARQNKIEGDLAEAQK 82
           H  G  P     ++  Q+V L I F  LY ++S+  LPRV G ID R  KI GD+A+A++
Sbjct: 17  HESGGLPQLQFEHWGGQIVWLLIIFAVLYAVLSKALLPRVSGAIDERGAKIAGDIADARR 76

Query: 83  LKDESDAALKAYETELANARANAQAIGNETREKLNAASEAERKALEEKL-AAKLADAEKQ 141
           +KDE++A  +A   E+A ARA AQ       +   +A  AER+A EE + A KLA AE  
Sbjct: 77  MKDEAEAQARAAAAEVAEARAKAQK-TAADAKAKASAEAAERQAKEEAVLAEKLAAAEAS 135

Query: 142 IATTRTNAMSNVRGIAADAAGAIVQQLAGVTPDANAVNSAV 182
           I T R  AMS VR +A + AGAIV++L G    A  + SA+
Sbjct: 136 IQTARDQAMSQVRVVAEETAGAIVEKLTGKAASAAELKSAL 176