BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0104.0088.p         (141 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4486 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon...   129   3e-30
SSO2884 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...   124   7e-29
AGpA316 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...   124   9e-29
PA0232 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon...   121   4e-28
RSc2249 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...   120   8e-28

>PA4486 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Pae Pseudomonas aeruginosa
          Length = 128

 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 77/104 (74%)

Query: 9   GLEIRKAVLGEAYVNNALKNSDSFNKPFQELVTEYCWGAVWGREELPRKTRSMLNLAMIS 68
           GLEIR+ V+G+A+V  A+ N+ +F +P Q+ V E+ WG+VW RE LPRKTRS++ LA ++
Sbjct: 8   GLEIRREVMGDAFVERAMGNATAFTQPLQDFVNEHAWGSVWAREALPRKTRSLITLAALT 67

Query: 69  ILNRPHELKAHIKGALTNGVSRDEIREIFMQVSIYAGIPAGVDS 112
            L  P ELK H++GAL NG + +EIRE  +  ++YAG+PA +D+
Sbjct: 68  ALKCPQELKGHVRGALNNGCTVEEIREALLHCAVYAGVPAAIDA 111


>SSO2884 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Sso Sulfolobus solfataricus
          Length = 139

 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 81/111 (72%), Gaps = 1/111 (0%)

Query: 3   QKTHDKGLEIRKAVLGEAYVNNALKNSDSFNKPFQELVTEYCWGAVWGREE-LPRKTRSM 61
           +K ++KGLE+RK V+G  YV  +L  +  FN+  QE+VT + WG +W R++ +P+K RS+
Sbjct: 12  KKLYEKGLEVRKKVMGREYVEKSLSQTTDFNRELQEMVTIFAWGLIWTRDDVIPKKIRSL 71

Query: 62  LNLAMISILNRPHELKAHIKGALTNGVSRDEIREIFMQVSIYAGIPAGVDS 112
           +N+ ++S LNR +ELK H+KGA+ NG + +EI+E+ +QV  Y G+PA +DS
Sbjct: 72  INIGILSCLNRQNELKLHVKGAIRNGCTEEEIKEVLLQVGAYCGLPAAMDS 122


>AGpA316 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 129

 Score =  124 bits (310), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 77/112 (68%)

Query: 1   MDQKTHDKGLEIRKAVLGEAYVNNALKNSDSFNKPFQELVTEYCWGAVWGREELPRKTRS 60
           MD+     G  +R+ VLG++YV+ AL+ +D F++PFQ+++ EYCWG  W  + L  K RS
Sbjct: 1   MDKPLQQAGEAVRRKVLGDSYVDRALEKADDFSRPFQDILNEYCWGMAWTDDALDLKQRS 60

Query: 61  MLNLAMISILNRPHELKAHIKGALTNGVSRDEIREIFMQVSIYAGIPAGVDS 112
           +LNL M++ L R HE + H +GAL NG++  E+R    Q+++Y GIPAGV++
Sbjct: 61  LLNLGMLAALGRMHEFRIHFRGALRNGLTEAELRAALTQIAVYCGIPAGVEA 112


>PA0232 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Pae Pseudomonas aeruginosa
          Length = 133

 Score =  121 bits (304), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 79/110 (71%), Gaps = 1/110 (0%)

Query: 1   MDQKT-HDKGLEIRKAVLGEAYVNNALKNSDSFNKPFQELVTEYCWGAVWGREELPRKTR 59
           MD+K  ++ G+++R+AVLG A+V  +L N   FN+ FQE++T + WG +W R  LPR TR
Sbjct: 1   MDEKQRYEAGMQVRRAVLGAAHVERSLANLTPFNEEFQEMITRHAWGDIWTRPGLPRHTR 60

Query: 60  SMLNLAMISILNRPHELKAHIKGALTNGVSRDEIREIFMQVSIYAGIPAG 109
           S++ +AM+  +NR  ELK H++ A  NGVSRDEI+E+ MQ +IY GIPA 
Sbjct: 61  SLVTIAMLIGMNRNEELKLHLRAAKNNGVSRDEIKEVIMQSAIYCGIPAA 110


>RSc2249 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Rso Ralstonia solanacearum
          Length = 131

 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 76/110 (69%), Gaps = 1/110 (0%)

Query: 1   MDQKT-HDKGLEIRKAVLGEAYVNNALKNSDSFNKPFQELVTEYCWGAVWGREELPRKTR 59
           MD++  H  G+++R+AVLG+A+V+ A         PFQ+L+T Y WG +W R  LPR TR
Sbjct: 1   MDERDRHHAGMQVRRAVLGDAHVDRATAAQTELTAPFQDLITRYAWGEIWTRPGLPRHTR 60

Query: 60  SMLNLAMISILNRPHELKAHIKGALTNGVSRDEIREIFMQVSIYAGIPAG 109
           S+L +AM+  LNR  EL+ H++ A  NGV+R+EI+E+ +Q +IY G+PA 
Sbjct: 61  SLLTIAMMVALNRDGELRLHLRAAANNGVTREEIQEVLLQTAIYCGVPAA 110