BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0081.p (285 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1733 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 311 2e-84 mlr5687 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 289 5e-78 AGl2011 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 245 1e-64 AGl1696 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 164 2e-40 SMc04223 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 161 1e-39 >AGl1733 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 311 bits (796), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 156/278 (56%), Positives = 204/278 (73%), Gaps = 1/278 (0%) Query: 3 MKALDIEAVQAFVLVADLSSFTRAAQAMETTQSAISLKIRRLEDGLGRRLLERTPRLVRL 62 M LD+EAV+AFV +ADL SFTRAA+ + TTQ AIS+K++RLED LG+RLLERTPR VRL Sbjct: 4 MSTLDVEAVEAFVTIADLQSFTRAAETLGTTQGAISVKLKRLEDRLGQRLLERTPRSVRL 63 Query: 63 SAEGAAFLGAARNLVAAHQSAIGSFAVEHRRLVVGISHHIVGSELASLLKRMNTTDPGVV 122 SA+GA FL AR +AAH A+ + RR +GI+ H+ G E+ +LL R+N DPG+ Sbjct: 64 SAQGAVFLAPAREFLAAHDRALAGLSSPRRRFGLGIAAHVAGPEVPTLLARLNDHDPGLT 123 Query: 123 IQLHVDTSRSVLSAFDDGKLDAAIVLRHDAKRRDGDVLFEELFGWMAAPDFHHRPGEPLR 182 I++ +D SRS+L AFD G++DAAI+ R D RRDG+VL E FGW A P F HR GEPLR Sbjct: 124 IEVRMDHSRSLLDAFDRGEIDAAIIRRED-DRRDGEVLGPEHFGWYATPQFEHRQGEPLR 182 Query: 183 LATQAEPCSVRAMAIEVLDAAGIAWTEAFVGGGLSTIGAALSAGLAVAALARRVAPADTV 242 LA + C VR +A LDAA IAWTE F+GG S + AA+SAGLA++A + R+AP TV Sbjct: 183 LAALSPACGVRNIATHALDAAAIAWTEVFLGGTSSMVTAAVSAGLAISAFSCRLAPPGTV 242 Query: 243 DLGPKLGLPPLPSRDVVLHSKLSDARTRQALRTLGAAF 280 ++ + GLPPLPS ++++ S L+D+R+R+ALRTL AAF Sbjct: 243 EVSQRFGLPPLPSSEIIMFSTLTDSRSREALRTLAAAF 280 >mlr5687 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 302 Score = 289 bits (739), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 149/275 (54%), Positives = 198/275 (72%), Gaps = 1/275 (0%) Query: 6 LDIEAVQAFVLVADLSSFTRAAQAMETTQSAISLKIRRLEDGLGRRLLERTPRLVRLSAE 65 LD++AV+AFV VA+L SFTRAA+A+ +TQ AIS+K++RLED +G+RL+ERTPRLVRLSA Sbjct: 3 LDVDAVKAFVAVAELRSFTRAAEALGSTQGAISVKLKRLEDRMGQRLIERTPRLVRLSAR 62 Query: 66 GAAFLGAARNLVAAHQSAIGSFAVEHRRLVVGISHHIVGSELASLLKRMNTTDPGVVIQL 125 GA FL AR L+AAH A+ S A R +GI+ H+ G+E+ +LL R+N DP + I++ Sbjct: 63 GAVFLDPARELLAAHDRAVASLAAVRRHFRLGIATHVGGAEVPTLLARLNAHDPALTIEV 122 Query: 126 HVDTSRSVLSAFDDGKLDAAIVLRHDAKRRDGDVLFEELFGWMAAPDFHHRPGEPLRLAT 185 +D +R +++AFD G LDAAIV R D RRDG+VL E FGW A PDF +R GEPLRLA Sbjct: 123 RLDDTRELIAAFDRGDLDAAIVRRED-DRRDGEVLAPEHFGWYATPDFVYRAGEPLRLAA 181 Query: 186 QAEPCSVRAMAIEVLDAAGIAWTEAFVGGGLSTIGAALSAGLAVAALARRVAPADTVDLG 245 A CS+R + LDA GI WT+ F+G G + A+SAGLAV A + R+ P T+++ Sbjct: 182 SAPSCSIRDVITGTLDAVGIPWTQVFLGCGSFAVAEAVSAGLAVGAFSSRLVPPGTMEVS 241 Query: 246 PKLGLPPLPSRDVVLHSKLSDARTRQALRTLGAAF 280 K GLPPLP+ +++L S LSDA++R ALRTL AF Sbjct: 242 RKFGLPPLPASEIMLLSTLSDAQSRDALRTLTMAF 276 >AGl2011 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 283 Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 131/279 (46%), Positives = 183/279 (65%), Gaps = 1/279 (0%) Query: 2 AMKALDIEAVQAFVLVADLSSFTRAAQAMETTQSAISLKIRRLEDGLGRRLLERTPRLVR 61 AM++LD EAV+AF+LVA+L SFT+ A M T+Q+AISL++RRLED LG RL+ERTPR VR Sbjct: 3 AMRSLDPEAVEAFLLVAELQSFTQVAGVMNTSQAAISLRLRRLEDMLGHRLVERTPRRVR 62 Query: 62 LSAEGAAFLGAARNLVAAHQSAIGSFAVEHRRLVVGISHHIVGSELASLLKRMNTTDPGV 121 L+A G FL AR VAA + A+ F E RL +G++HH++G++L +L+ ++ V Sbjct: 63 LTAAGERFLEPARAYVAAGRRALDVFGQEPTRLAIGVTHHLIGADLPRILRVVSERVTSV 122 Query: 122 VIQLHVDTSRSVLSAFDDGKLDAAIVLRHDAKRRDGDVLFEELFGWMAAPDFHHRPGEPL 181 + L +R++L +D G+LDA +VLRHD RRDG+ LF+E FGW + DF R P+ Sbjct: 123 TLHLRTAGTRTLLELYDAGELDAIVVLRHDDIRRDGEPLFQESFGWYGSADFDLRSDVPV 182 Query: 182 RLATQAEPCSVRAMAIEVLDAAGIAWTEAFVGGGLSTIGAALSAGLAVAALARRVAPADT 241 L Q EPC++RAMA+ L++A IAW E FVG G + +GAA+ AG+ V LA+ APA Sbjct: 183 PLVLQPEPCNLRAMALRALESADIAWREVFVGTGATAVGAAVEAGIGVGLLAQSAAPASV 242 Query: 242 VDLGPKLGLPPLPSRDVVLHSKLSDARTRQALRTLGAAF 280 + + LP LP DVV+ S ++ LR + AF Sbjct: 243 RQVRSR-SLPELPKLDVVMISTVTGDHANAVLRRITGAF 280 >AGl1696 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 280 Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/277 (37%), Positives = 152/277 (54%), Gaps = 3/277 (1%) Query: 6 LDIEAVQAFVLVADLSSFTRAAQAMETTQSAISLKIRRLEDGLGRRLLERTPRLVRLSAE 65 +D+E+V+ F+L +L S TRAA+A T Q +S K++ LE LGRRL++R+PR +RL+ + Sbjct: 2 IDLESVRLFILSVELGSLTRAAEAAGTVQPVVSQKLKMLEQRLGRRLIDRSPRHLRLTED 61 Query: 66 GAAFLGAARNLVAAHQSAIGSFAVEHRRLVVGISHHIVGSELASLLKRMNTTDP-GVVIQ 124 G FL AR L+A H+ A+ + S H +GS L++ ++ M + P VI Sbjct: 62 GQVFLPKARELLAKHEDALNFSDEPPLHFALAASDHAIGSRLSAAIRAMRASLPANAVID 121 Query: 125 LHVDTSRSVLSAFDDGKLDAAIVLRHDAKRRDGDVLFEELFGWMAAPDFHHRPGEPLRLA 184 + + SR V +F G DAAI+ R + DG+VL + GW APD+ R + L Sbjct: 122 VTLGFSRQVKESFASGLADAAII-RRNGGGSDGEVLRTDRLGWRVAPDWRPRANSAVPLV 180 Query: 185 TQAEPCSVRAMAIEVLDAAGIAWTEAFVGGGLSTIGAALSAGLAVAALARRVAPADTVDL 244 + C VR +AI L AG+ W +AF G S + + AG +AAL ++ D Sbjct: 181 SLGPGCGVRDIAISELGKAGVVWRDAFTAGSCSALLEGVHAGAGIAALG-DISARGLPDR 239 Query: 245 GPKLGLPPLPSRDVVLHSKLSDARTRQALRTLGAAFA 281 G +LGLPPLP D+VL S+ A+R L AA + Sbjct: 240 GAELGLPPLPPSDIVLLSRARTPSHASAIRALVAAVS 276 >SMc04223 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 211 Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 85/155 (54%), Positives = 108/155 (69%), Gaps = 2/155 (1%) Query: 127 VDTSRSVLSAFDDGKLDAAIVLRHDAKRRDGDVLFEELFGWMAAPDFHHRPGEPLRLATQ 186 VD SR++L A++DG LDA IV R D RRDG+VL E FGW A+ DF H GEPLR+A+ Sbjct: 2 VDNSRALLDAYEDGTLDAVIV-RSDDDRRDGEVLGPEHFGWFASSDFEHHTGEPLRIASH 60 Query: 187 AEPCSVRAMAIEVLDAAGIAWTEAFVGGGLSTIGAALSAGLAVAALARRVAPADTVDLGP 246 C+VR +A +LDAA I WTE FV GG S + AALSAGLAVAA R+A AD +++ Sbjct: 61 PSCCTVREVATRLLDAASIRWTEVFV-GGTSAVTAALSAGLAVAAFPCRLATADMIEVSQ 119 Query: 247 KLGLPPLPSRDVVLHSKLSDARTRQALRTLGAAFA 281 L LP +PS +VLHS L+D +TR+ LR + AAF+ Sbjct: 120 MLNLPSIPSLSIVLHSSLTDPKTRETLRAITAAFS 154