BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0104.0061.p         (185 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll3477 [V] COG1403 Restriction endonuclease Mlo Mesorhizobium loti   303   2e-82
AGl2586 [V] COG1403 Restriction endonuclease Atu Agrobacterium t...   295   5e-80
SMc00737 [V] COG1403 Restriction endonuclease Sme Sinorhizobium ...   292   3e-79
BMEI0383 [V] COG1403 Restriction endonuclease Bme Brucella melit...   282   3e-76
CC2200 Non COG                                                        251   8e-67

>mll3477 [V] COG1403 Restriction endonuclease Mlo Mesorhizobium loti
          Length = 185

 Score =  303 bits (775), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 140/185 (75%), Positives = 157/185 (84%)

Query: 1   LNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAVRSPSFE 60
           +   VS  G P LVLNAD+RPLSYYPLSLWSWQDAIKAVFLDRVNIV  Y+ AV SP+F 
Sbjct: 1   MTVAVSPDGLPALVLNADYRPLSYYPLSLWSWQDAIKAVFLDRVNIVAEYEHAVSSPTFS 60

Query: 61  IQLPSVVSLKSFVKPTTHPAFTRFNVFLRDRFSCQYCLSGDDLTFDHIIPRSKGGQTTWE 120
           ++LPSVVSLK++VKP+ HPAFTRFNVFLRDRF CQYC + DDLTFDH+IPR +GG TTWE
Sbjct: 61  MKLPSVVSLKAYVKPSRHPAFTRFNVFLRDRFQCQYCGTPDDLTFDHVIPRHRGGATTWE 120

Query: 121 NVVAACSPCNLRKGNLTPQQAKMFPKQTPYAPTVHQLHRNGRLFPPNYLHESWLDYLYWD 180
           NVVAACSPCNLRKG + P  AKM+P Q PY PTVH LH NGRLFPPN+LHESW+DYLYWD
Sbjct: 121 NVVAACSPCNLRKGGMMPAHAKMWPLQKPYQPTVHDLHNNGRLFPPNHLHESWMDYLYWD 180

Query: 181 TELDP 185
            EL+P
Sbjct: 181 VELEP 185


>AGl2586 [V] COG1403 Restriction endonuclease Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 185

 Score =  295 bits (754), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 136/185 (73%), Positives = 155/185 (83%)

Query: 1   LNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAVRSPSFE 60
           +   VS    P LVLNAD+RPLSYYPLSLWSWQDAIKAVFLDRVNI+  YD AV SPSF 
Sbjct: 1   MTIAVSPQALPALVLNADYRPLSYYPLSLWSWQDAIKAVFLDRVNIIAEYDHAVSSPSFS 60

Query: 61  IQLPSVVSLKSFVKPTTHPAFTRFNVFLRDRFSCQYCLSGDDLTFDHIIPRSKGGQTTWE 120
           ++LPSVVSLK++V+P  +PAFTRFNVFLRD+F CQYC + D+LTFDH+IPR+ GG+TTW 
Sbjct: 61  MRLPSVVSLKTYVQPIRNPAFTRFNVFLRDKFECQYCGTRDELTFDHVIPRAHGGETTWH 120

Query: 121 NVVAACSPCNLRKGNLTPQQAKMFPKQTPYAPTVHQLHRNGRLFPPNYLHESWLDYLYWD 180
           NVVAACSPCNLRKG+  P+QA MFP Q P+ PTV  LH NGRLFPPNYLHESW+DYLYWD
Sbjct: 121 NVVAACSPCNLRKGSKLPKQAGMFPAQKPFQPTVQDLHNNGRLFPPNYLHESWMDYLYWD 180

Query: 181 TELDP 185
           TEL P
Sbjct: 181 TELQP 185


>SMc00737 [V] COG1403 Restriction endonuclease Sme Sinorhizobium meliloti
          Length = 185

 Score =  292 bits (747), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 153/181 (84%)

Query: 5   VSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAVRSPSFEIQLP 64
           VS    P LVLNAD+RPLSYYPLSLWSWQDAIKAVFLDRV I+  Y+ +V SPSF ++LP
Sbjct: 5   VSPQALPALVLNADYRPLSYYPLSLWSWQDAIKAVFLDRVTILAEYEHSVSSPSFSMRLP 64

Query: 65  SVVSLKSFVKPTTHPAFTRFNVFLRDRFSCQYCLSGDDLTFDHIIPRSKGGQTTWENVVA 124
           SVV LKS+V+P+ HPAFTRFNVFLRD+F CQYC S DDLTFDH++PR+ GGQTTWENVVA
Sbjct: 65  SVVCLKSYVQPSRHPAFTRFNVFLRDKFECQYCGSPDDLTFDHVVPRAHGGQTTWENVVA 124

Query: 125 ACSPCNLRKGNLTPQQAKMFPKQTPYAPTVHQLHRNGRLFPPNYLHESWLDYLYWDTELD 184
           ACSPCNLRKG+  P+QA MFP Q PY PTV  LH NGRLFPPN+LH+SW+DYLYWD EL 
Sbjct: 125 ACSPCNLRKGSKLPKQAGMFPHQKPYHPTVQDLHNNGRLFPPNHLHDSWMDYLYWDVELQ 184

Query: 185 P 185
           P
Sbjct: 185 P 185


>BMEI0383 [V] COG1403 Restriction endonuclease Bme Brucella melitensis
          Length = 190

 Score =  282 bits (722), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 130/181 (71%), Positives = 150/181 (82%)

Query: 5   VSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAVRSPSFEIQLP 64
           VS  G P LVLNAD+RPLSYYPLSLWSWQDAIKAVFL+RV+IV  YD+ V SPSF +++P
Sbjct: 10  VSASGLPALVLNADYRPLSYYPLSLWSWQDAIKAVFLERVSIVAEYDQVVSSPSFSMRIP 69

Query: 65  SVVSLKSFVKPTTHPAFTRFNVFLRDRFSCQYCLSGDDLTFDHIIPRSKGGQTTWENVVA 124
           SV+ LK +VKP  +PAFTRFNVFLRDRF CQYC S  DLTFDH+IPR  GG+TTWENVVA
Sbjct: 70  SVICLKDYVKPPRYPAFTRFNVFLRDRFECQYCGSPHDLTFDHVIPRCHGGETTWENVVA 129

Query: 125 ACSPCNLRKGNLTPQQAKMFPKQTPYAPTVHQLHRNGRLFPPNYLHESWLDYLYWDTELD 184
           ACSPCNLRKG + P  A+M+P+Q P  PTV  LH  GRLFPPN+LH+SWLD+LYWD EL+
Sbjct: 130 ACSPCNLRKGGMMPAVAQMWPRQKPAMPTVQDLHNKGRLFPPNHLHDSWLDFLYWDVELE 189

Query: 185 P 185
           P
Sbjct: 190 P 190


>CC2200 Non COG
          Length = 187

 Score =  251 bits (640), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 116/177 (65%), Positives = 139/177 (78%)

Query: 8   GGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAVRSPSFEIQLPSVV 67
            G P LVLNADFRPLSYYPLSLW WQ+ IKAVFLDRV++V  YD+ + SPS E++LPSVV
Sbjct: 10  SGMPALVLNADFRPLSYYPLSLWPWQEVIKAVFLDRVDVVASYDQVIHSPSCEMRLPSVV 69

Query: 68  SLKSFVKPTTHPAFTRFNVFLRDRFSCQYCLSGDDLTFDHIIPRSKGGQTTWENVVAACS 127
           +LK +V     PAFTRFN+FLRD FSCQYC S +DLTFDH+IPRS+GG+TTWEN+V AC+
Sbjct: 70  ALKQYVPQERPPAFTRFNLFLRDSFSCQYCGSPEDLTFDHVIPRSRGGRTTWENIVTACA 129

Query: 128 PCNLRKGNLTPQQAKMFPKQTPYAPTVHQLHRNGRLFPPNYLHESWLDYLYWDTELD 184
           PCNL KG  TP++A M P  T   P++++L   GR FPP  LH SWLDYLYWD EL+
Sbjct: 130 PCNLSKGGRTPREAGMQPFHTARRPSMYELQERGRRFPPGRLHVSWLDYLYWDIELE 186