BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0104.0055.p         (123 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl343 [GEPR] COG0477 Permeases of the major facilitator superfa...   136   1e-32
RSp1047 [GEPR] COG0477 Permeases of the major facilitator superf...   120   1e-27
NMB1362 [GEPR] COG0477 Permeases of the major facilitator superf...    75   3e-14
NMA1574 [GEPR] COG0477 Permeases of the major facilitator superf...    75   4e-14

>AGl343 [GEPR] COG0477 Permeases of the major facilitator superfamily Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 552

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/92 (84%), Positives = 81/92 (88%)

Query: 1   VIGMASPMLQEIFAGKLIGLPNVGFNQLDAGQKAQIAAIAAGFAGLLSLFNIGGRFFWAS 60
           VIGMASPMLQEIFAG LIGLP VGF  LDAGQKAQIAAIAAGF GLLSLFNIGGRFFWAS
Sbjct: 293 VIGMASPMLQEIFAGSLIGLPGVGFADLDAGQKAQIAAIAAGFTGLLSLFNIGGRFFWAS 352

Query: 61  LSDKIGRKNTYYTFFILGIALYALAPTFLLYG 92
           +SDKIGRKNTY+ FF+LGI LYALAPT    G
Sbjct: 353 MSDKIGRKNTYFCFFVLGIILYALAPTLATMG 384


>RSp1047 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 549

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 1   VIGMASPMLQEIFAGKLIGLPNVGFNQLDAGQKAQIAAIAAGFAGLLSLFNIGGRFFWAS 60
           V+GMASP+LQE+F GKL+G+    F +L A QK QIAAIAAGF GLLSLFNIGGRFFWAS
Sbjct: 288 VLGMASPLLQEVFGGKLLGV-TTAFTELTAAQKGQIAAIAAGFTGLLSLFNIGGRFFWAS 346

Query: 61  LSDKIGRKNTYYTFFILGIALYALAP 86
           LSD++GRK TY  FF LG  LYA  P
Sbjct: 347 LSDRLGRKLTYAVFFALGFVLYAAIP 372


>NMB1362 [GEPR] COG0477 Permeases of the major facilitator superfamily Nme
           Neisseria meningitidis MC58
          Length = 513

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 55/87 (63%), Gaps = 11/87 (12%)

Query: 1   VIGMASPMLQEIFAGKLIGLPNVGFNQLDAGQKAQIAAIAAGFAGLLSLFNIGGRFFWAS 60
           V+G AS M+QE+F+   IG            Q A  A  AAGF  LLSLFN+GGRF W+S
Sbjct: 265 VLGQASVMIQELFSETSIGR-----------QAAVGAGAAAGFVSLLSLFNMGGRFLWSS 313

Query: 61  LSDKIGRKNTYYTFFILGIALYALAPT 87
           +SDKIGRKNTY  FF+LG  LY   P+
Sbjct: 314 VSDKIGRKNTYTIFFVLGSLLYFAVPS 340


>NMA1574 [GEPR] COG0477 Permeases of the major facilitator superfamily NmA
           Neisseria meningitidis Z2491
          Length = 513

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 55/87 (63%), Gaps = 11/87 (12%)

Query: 1   VIGMASPMLQEIFAGKLIGLPNVGFNQLDAGQKAQIAAIAAGFAGLLSLFNIGGRFFWAS 60
           V+G AS M+QE+F+   IG            Q A  A  AAGF  LLSLFN+GGRF W+S
Sbjct: 265 VLGQASVMIQELFSETSIGR-----------QAAVGAGAAAGFVSLLSLFNMGGRFLWSS 313

Query: 61  LSDKIGRKNTYYTFFILGIALYALAPT 87
           +SDKIGRKNTY  FF+LG  LY   P+
Sbjct: 314 VSDKIGRKNTYTIFFVLGSLLYFAVPS 340